Variant report

Variant	rs16950652
Chromosome Location	chr18:44810442-44810443
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr18:44809702-44810499	A549	lung:	n/a	n/a
2	CTCF	chr18:44809703-44810466	SK-N-SH	brain:	n/a	n/a
3	E2F4	chr18:44810315-44810671	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr18:44810240..44811750-chr18:44815375..44817076,2	K562	blood:
2	chr18:44626315..44627260-chr18:44809604..44810507,2	K562	blood:
3	chr18:44741605..44742518-chr18:44809606..44810656,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267761	TF binding region

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1347340	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1347343	0.81[AFR][1000 genomes]
rs16950644	0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs16950662	0.92[EUR][1000 genomes]
rs16950692	0.98[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs16950719	0.92[EUR][1000 genomes]
rs16950736	0.92[EUR][1000 genomes]
rs16950741	0.92[EUR][1000 genomes]
rs16950744	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16950754	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16950767	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16950777	0.92[EUR][1000 genomes]
rs1944287	0.98[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28401248	0.86[ASN][1000 genomes]
rs28455576	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28737231	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55687418	0.92[EUR][1000 genomes]
rs55698938	0.92[EUR][1000 genomes]
rs55704228	0.92[EUR][1000 genomes]
rs55813572	0.92[EUR][1000 genomes]
rs55825078	0.84[EUR][1000 genomes]
rs55892143	0.92[EUR][1000 genomes]
rs55977647	0.92[EUR][1000 genomes]
rs56014831	0.92[EUR][1000 genomes]
rs56077098	0.92[EUR][1000 genomes]
rs56109704	0.92[EUR][1000 genomes]
rs56287570	0.84[EUR][1000 genomes]
rs58684150	0.92[EUR][1000 genomes]
rs66485937	0.92[EUR][1000 genomes]
rs66914705	0.92[EUR][1000 genomes]
rs67119810	0.92[EUR][1000 genomes]
rs67123015	0.92[EUR][1000 genomes]
rs67514853	0.92[EUR][1000 genomes]
rs67822267	0.92[EUR][1000 genomes]
rs7241169	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72906489	0.92[EUR][1000 genomes]
rs72906494	0.92[EUR][1000 genomes]
rs72906498	0.92[EUR][1000 genomes]
rs72908505	0.92[EUR][1000 genomes]
rs72908507	0.92[EUR][1000 genomes]
rs72908508	0.92[EUR][1000 genomes]
rs72908518	0.92[EUR][1000 genomes]
rs72908529	0.92[EUR][1000 genomes]
rs72908533	0.92[EUR][1000 genomes]
rs72908537	0.92[EUR][1000 genomes]
rs72908538	0.92[EUR][1000 genomes]
rs72908542	0.92[EUR][1000 genomes]
rs72908558	0.92[EUR][1000 genomes]
rs72908572	0.92[EUR][1000 genomes]
rs72908575	0.92[EUR][1000 genomes]
rs72908588	0.85[EUR][1000 genomes]
rs72910504	0.92[EUR][1000 genomes]
rs72910505	0.92[EUR][1000 genomes]
rs72910507	0.92[EUR][1000 genomes]
rs72910512	0.92[EUR][1000 genomes]
rs72910513	0.92[EUR][1000 genomes]
rs72910516	0.92[EUR][1000 genomes]
rs72910538	0.84[EUR][1000 genomes]
rs72910540	0.84[EUR][1000 genomes]
rs72910544	0.84[EUR][1000 genomes]
rs72910547	0.84[EUR][1000 genomes]
rs72910552	0.84[EUR][1000 genomes]
rs72910554	0.84[EUR][1000 genomes]
rs72912419	0.84[EUR][1000 genomes]
rs72912427	0.84[EUR][1000 genomes]
rs72912445	0.84[EUR][1000 genomes]
rs72912456	0.84[EUR][1000 genomes]
rs72912458	0.84[EUR][1000 genomes]
rs72912473	0.84[EUR][1000 genomes]
rs72914847	0.92[EUR][1000 genomes]
rs72914848	0.92[EUR][1000 genomes]
rs72914856	0.92[EUR][1000 genomes]
rs72914857	0.92[EUR][1000 genomes]
rs72914862	0.92[EUR][1000 genomes]
rs8087053	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8099226	0.97[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9946349	0.91[ASN][1000 genomes]
rs9949210	0.86[ASN][1000 genomes]
rs9950003	0.91[ASN][1000 genomes]
rs9950055	0.91[ASN][1000 genomes]
rs9952842	0.91[ASN][1000 genomes]
rs9956537	0.86[ASN][1000 genomes]
rs9959416	0.86[ASN][1000 genomes]
rs9962170	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs9964499	0.91[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44810400-44819200	Weak transcription	Muscle Satellite Cultured Cells	--

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