Variant report

Variant	rs16950744
Chromosome Location	chr18:44815110-44815111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:44811639..44814286-chr18:44814961..44816787,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267761	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1347339	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1347340	1.00[CEU][hapmap]
rs16950322	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs16950355	0.91[AFR][1000 genomes]
rs16950594	0.91[AFR][1000 genomes]
rs16950652	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16950662	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950735	1.00[AFR][1000 genomes]
rs16950736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950742	1.00[AFR][1000 genomes]
rs16950754	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950767	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950774	1.00[AFR][1000 genomes]
rs16950777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28455576	0.92[EUR][1000 genomes]
rs28737231	0.92[EUR][1000 genomes]
rs55687418	1.00[EUR][1000 genomes]
rs55698938	1.00[EUR][1000 genomes]
rs55704228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55802477	0.83[EUR][1000 genomes]
rs55813572	1.00[EUR][1000 genomes]
rs55825078	0.92[EUR][1000 genomes]
rs55892143	1.00[EUR][1000 genomes]
rs55977647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56014831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56077098	1.00[EUR][1000 genomes]
rs56109704	1.00[EUR][1000 genomes]
rs56287570	0.92[EUR][1000 genomes]
rs56317203	0.83[EUR][1000 genomes]
rs58684150	1.00[EUR][1000 genomes]
rs66485937	1.00[EUR][1000 genomes]
rs66914705	1.00[EUR][1000 genomes]
rs67119810	1.00[EUR][1000 genomes]
rs67123015	1.00[EUR][1000 genomes]
rs67514853	1.00[EUR][1000 genomes]
rs67822267	1.00[EUR][1000 genomes]
rs7234151	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7239748	0.91[AFR][1000 genomes]
rs72906489	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906498	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908508	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908538	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908572	1.00[EUR][1000 genomes]
rs72908575	1.00[EUR][1000 genomes]
rs72908588	0.92[EUR][1000 genomes]
rs72910504	1.00[EUR][1000 genomes]
rs72910505	1.00[EUR][1000 genomes]
rs72910507	1.00[EUR][1000 genomes]
rs72910512	1.00[EUR][1000 genomes]
rs72910513	1.00[EUR][1000 genomes]
rs72910516	1.00[EUR][1000 genomes]
rs72910538	0.92[EUR][1000 genomes]
rs72910540	0.92[EUR][1000 genomes]
rs72910544	0.92[EUR][1000 genomes]
rs72910547	0.92[EUR][1000 genomes]
rs72910552	0.92[EUR][1000 genomes]
rs72910554	0.92[EUR][1000 genomes]
rs72912419	0.92[EUR][1000 genomes]
rs72912427	0.92[EUR][1000 genomes]
rs72912445	0.92[EUR][1000 genomes]
rs72912456	0.92[EUR][1000 genomes]
rs72912458	0.92[EUR][1000 genomes]
rs72912473	0.92[EUR][1000 genomes]
rs72913178	1.00[ASN][1000 genomes]
rs72913180	1.00[ASN][1000 genomes]
rs72913186	1.00[ASN][1000 genomes]
rs72913187	1.00[ASN][1000 genomes]
rs72914803	1.00[ASN][1000 genomes]
rs72914805	1.00[ASN][1000 genomes]
rs72914809	1.00[ASN][1000 genomes]
rs72914811	1.00[ASN][1000 genomes]
rs72914814	1.00[ASN][1000 genomes]
rs72914818	1.00[ASN][1000 genomes]
rs72914823	1.00[ASN][1000 genomes]
rs72914829	1.00[ASN][1000 genomes]
rs72914834	1.00[ASN][1000 genomes]
rs72914837	1.00[ASN][1000 genomes]
rs72914843	1.00[ASN][1000 genomes]
rs72914847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914857	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8086145	0.91[AFR][1000 genomes]
rs8087053	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8095903	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44810400-44819200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr18:44813400-44815400	Weak transcription	Pancreas	Pancrea
3	chr18:44814200-44815200	Enhancers	Brain Cingulate Gyrus	brain
4	chr18:44814200-44815600	Bivalent Enhancer	Brain Germinal Matrix	brain
5	chr18:44814400-44815200	Bivalent Enhancer	Fetal Brain Female	brain
6	chr18:44814800-44815200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr18:44814800-44815200	Bivalent Enhancer	Fetal Brain Male	brain
8	chr18:44814800-44815400	Enhancers	Brain Hippocampus Middle	brain
9	chr18:44815000-44815200	Enhancers	HepG2	liver

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