Variant report

Variant	rs72913187
Chromosome Location	chr18:44763890-44763891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr18:44763648-44763977	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
RNU6-1131P	TF binding region

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs16950662	1.00[ASN][1000 genomes]
rs16950719	1.00[ASN][1000 genomes]
rs16950736	1.00[ASN][1000 genomes]
rs16950741	1.00[ASN][1000 genomes]
rs16950744	1.00[ASN][1000 genomes]
rs16950754	1.00[ASN][1000 genomes]
rs16950767	1.00[ASN][1000 genomes]
rs16950777	1.00[ASN][1000 genomes]
rs55682632	1.00[AFR][1000 genomes]
rs55704228	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55840418	1.00[AFR][1000 genomes]
rs55877804	1.00[AFR][1000 genomes]
rs55916944	1.00[AFR][1000 genomes]
rs55977647	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56003577	1.00[AFR][1000 genomes]
rs56014831	1.00[ASN][1000 genomes]
rs56101223	1.00[AFR][1000 genomes]
rs56109213	1.00[AFR][1000 genomes]
rs56132373	1.00[AFR][1000 genomes]
rs56272937	1.00[AFR][1000 genomes]
rs56297904	1.00[AFR][1000 genomes]
rs56299848	1.00[AFR][1000 genomes]
rs61743415	1.00[AFR][1000 genomes]
rs61743594	1.00[AFR][1000 genomes]
rs72903239	1.00[AFR][1000 genomes]
rs72903243	1.00[AFR][1000 genomes]
rs72903249	1.00[AFR][1000 genomes]
rs72903269	1.00[AFR][1000 genomes]
rs72903273	1.00[AFR][1000 genomes]
rs72903277	1.00[AFR][1000 genomes]
rs72903280	1.00[AFR][1000 genomes]
rs72903291	1.00[AFR][1000 genomes]
rs72903295	1.00[AFR][1000 genomes]
rs72905420	1.00[AFR][1000 genomes]
rs72905424	1.00[AFR][1000 genomes]
rs72905425	1.00[AFR][1000 genomes]
rs72905429	1.00[AFR][1000 genomes]
rs72905435	1.00[AFR][1000 genomes]
rs72905443	1.00[AFR][1000 genomes]
rs72905444	1.00[AFR][1000 genomes]
rs72905446	1.00[AFR][1000 genomes]
rs72905450	1.00[AFR][1000 genomes]
rs72905454	1.00[AFR][1000 genomes]
rs72905460	1.00[AFR][1000 genomes]
rs72905499	1.00[AFR][1000 genomes]
rs72906489	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72906494	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72906498	1.00[ASN][1000 genomes]
rs72907220	1.00[AFR][1000 genomes]
rs72907225	1.00[AFR][1000 genomes]
rs72907230	1.00[AFR][1000 genomes]
rs72907240	1.00[AFR][1000 genomes]
rs72907243	1.00[AFR][1000 genomes]
rs72907247	1.00[AFR][1000 genomes]
rs72907254	1.00[AFR][1000 genomes]
rs72907261	1.00[AFR][1000 genomes]
rs72907269	1.00[AFR][1000 genomes]
rs72907290	1.00[AFR][1000 genomes]
rs72907298	1.00[AFR][1000 genomes]
rs72908505	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72908507	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72908508	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72908518	1.00[ASN][1000 genomes]
rs72908529	1.00[ASN][1000 genomes]
rs72908533	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72908537	1.00[ASN][1000 genomes]
rs72908538	1.00[ASN][1000 genomes]
rs72908542	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72908558	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72909204	1.00[AFR][1000 genomes]
rs72909212	1.00[AFR][1000 genomes]
rs72909229	1.00[AFR][1000 genomes]
rs72909252	1.00[AFR][1000 genomes]
rs72909254	1.00[AFR][1000 genomes]
rs72909289	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72911203	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72911205	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72911207	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72913164	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72913166	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72913178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72913180	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72913186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914809	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914814	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914818	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914820	0.87[EUR][1000 genomes]
rs72914823	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914829	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914834	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914837	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914847	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72914848	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72914856	1.00[ASN][1000 genomes]
rs72914857	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72914862	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72919221	1.00[AFR][1000 genomes]
rs72919226	1.00[AFR][1000 genomes]
rs72919229	1.00[AFR][1000 genomes]
rs72919238	1.00[AFR][1000 genomes]
rs72919241	1.00[AFR][1000 genomes]
rs72919260	1.00[AFR][1000 genomes]
rs72919265	1.00[AFR][1000 genomes]
rs72919273	1.00[AFR][1000 genomes]
rs72919278	1.00[AFR][1000 genomes]
rs72919290	1.00[AFR][1000 genomes]
rs72919296	1.00[AFR][1000 genomes]
rs72921303	1.00[AFR][1000 genomes]
rs72921305	1.00[AFR][1000 genomes]
rs72921319	1.00[AFR][1000 genomes]
rs8095903	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv828226	chr18:44762014-44801196	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44762000-44769400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr18:44763400-44769400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr18:44763400-44772400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr18:44763600-44766200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr18:44763600-44769000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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