Variant report

Variant	rs16950662
Chromosome Location	chr18:44811424-44811425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr18:44811166-44811503	H1-neurons	neurons:	n/a	n/a
2	EP300	chr18:44811174-44811427	GM12878	blood:	n/a	n/a
3	POU2F2	chr18:44811133-44811449	GM12878	blood:	n/a	n/a
4	RELA	chr18:44810974-44811431	GM19099	blood:	n/a	n/a
5	RELA	chr18:44811054-44811539	GM18505	blood:	n/a	n/a
6	POU2F2	chr18:44810900-44811537	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:44810240..44811750-chr18:44815375..44817076,2	K562	blood:

Variant related genes	Relation type
ENSG00000267761	TF binding region

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs16950322	0.83[AFR][1000 genomes]
rs16950355	0.83[AFR][1000 genomes]
rs16950594	1.00[AFR][1000 genomes]
rs16950652	0.92[EUR][1000 genomes]
rs16950719	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950735	0.91[AFR][1000 genomes]
rs16950736	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950741	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950742	0.91[AFR][1000 genomes]
rs16950744	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950754	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950767	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950774	0.91[AFR][1000 genomes]
rs16950777	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28455576	0.92[EUR][1000 genomes]
rs28737231	0.92[EUR][1000 genomes]
rs55687418	1.00[EUR][1000 genomes]
rs55698938	1.00[EUR][1000 genomes]
rs55704228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55802477	0.83[EUR][1000 genomes]
rs55813572	1.00[EUR][1000 genomes]
rs55825078	0.92[EUR][1000 genomes]
rs55892143	1.00[EUR][1000 genomes]
rs55977647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56014831	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56077098	1.00[EUR][1000 genomes]
rs56109704	1.00[EUR][1000 genomes]
rs56287570	0.92[EUR][1000 genomes]
rs56317203	0.83[EUR][1000 genomes]
rs58684150	1.00[EUR][1000 genomes]
rs66485937	1.00[EUR][1000 genomes]
rs66914705	1.00[EUR][1000 genomes]
rs67119810	1.00[EUR][1000 genomes]
rs67123015	1.00[EUR][1000 genomes]
rs67514853	1.00[EUR][1000 genomes]
rs67822267	1.00[EUR][1000 genomes]
rs7234151	1.00[AFR][1000 genomes]
rs7239748	1.00[AFR][1000 genomes]
rs72906489	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908508	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908518	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908529	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908537	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908572	1.00[EUR][1000 genomes]
rs72908575	1.00[EUR][1000 genomes]
rs72908588	0.92[EUR][1000 genomes]
rs72910504	1.00[EUR][1000 genomes]
rs72910505	1.00[EUR][1000 genomes]
rs72910507	1.00[EUR][1000 genomes]
rs72910512	1.00[EUR][1000 genomes]
rs72910513	1.00[EUR][1000 genomes]
rs72910516	1.00[EUR][1000 genomes]
rs72910538	0.92[EUR][1000 genomes]
rs72910540	0.92[EUR][1000 genomes]
rs72910544	0.92[EUR][1000 genomes]
rs72910547	0.92[EUR][1000 genomes]
rs72910552	0.92[EUR][1000 genomes]
rs72910554	0.92[EUR][1000 genomes]
rs72912419	0.92[EUR][1000 genomes]
rs72912427	0.92[EUR][1000 genomes]
rs72912445	0.92[EUR][1000 genomes]
rs72912456	0.92[EUR][1000 genomes]
rs72912458	0.92[EUR][1000 genomes]
rs72912473	0.92[EUR][1000 genomes]
rs72913178	1.00[ASN][1000 genomes]
rs72913180	1.00[ASN][1000 genomes]
rs72913186	1.00[ASN][1000 genomes]
rs72913187	1.00[ASN][1000 genomes]
rs72914803	1.00[ASN][1000 genomes]
rs72914805	1.00[ASN][1000 genomes]
rs72914809	1.00[ASN][1000 genomes]
rs72914811	1.00[ASN][1000 genomes]
rs72914814	1.00[ASN][1000 genomes]
rs72914818	1.00[ASN][1000 genomes]
rs72914823	1.00[ASN][1000 genomes]
rs72914829	1.00[ASN][1000 genomes]
rs72914834	1.00[ASN][1000 genomes]
rs72914837	1.00[ASN][1000 genomes]
rs72914843	1.00[ASN][1000 genomes]
rs72914847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914857	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8086145	1.00[AFR][1000 genomes]
rs8087053	0.92[EUR][1000 genomes]
rs8095903	1.00[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44810400-44819200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr18:44810800-44812000	ZNF genes & repeats	GM12878-XiMat	blood
3	chr18:44811200-44811800	Bivalent Enhancer	Fetal Brain Female	brain
4	chr18:44811400-44812000	Bivalent Enhancer	Fetal Brain Male	brain

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