Variant report

Variant	rs55802477
Chromosome Location	chr18:44926435-44926436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs16950662	0.83[EUR][1000 genomes]
rs16950719	0.83[EUR][1000 genomes]
rs16950736	0.83[EUR][1000 genomes]
rs16950741	0.83[EUR][1000 genomes]
rs16950744	0.83[EUR][1000 genomes]
rs16950754	0.83[EUR][1000 genomes]
rs16950767	0.83[EUR][1000 genomes]
rs16950777	0.83[EUR][1000 genomes]
rs55687418	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55698938	0.83[EUR][1000 genomes]
rs55704228	0.83[EUR][1000 genomes]
rs55813572	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55825078	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55892143	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55977647	0.83[EUR][1000 genomes]
rs56014831	0.83[EUR][1000 genomes]
rs56077098	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56109704	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56287570	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56317203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58684150	0.83[EUR][1000 genomes]
rs60893527	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66485937	0.83[EUR][1000 genomes]
rs66914705	0.83[EUR][1000 genomes]
rs67119810	0.83[EUR][1000 genomes]
rs67123015	0.83[EUR][1000 genomes]
rs67514853	0.83[EUR][1000 genomes]
rs67822267	0.83[EUR][1000 genomes]
rs72906489	0.83[EUR][1000 genomes]
rs72906494	0.83[EUR][1000 genomes]
rs72906498	0.83[EUR][1000 genomes]
rs72908505	0.83[EUR][1000 genomes]
rs72908507	0.83[EUR][1000 genomes]
rs72908508	0.83[EUR][1000 genomes]
rs72908518	0.83[EUR][1000 genomes]
rs72908529	0.83[EUR][1000 genomes]
rs72908533	0.83[EUR][1000 genomes]
rs72908537	0.83[EUR][1000 genomes]
rs72908538	0.83[EUR][1000 genomes]
rs72908542	0.83[EUR][1000 genomes]
rs72908558	0.83[EUR][1000 genomes]
rs72908572	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72908575	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72910504	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72910505	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72910507	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72910512	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72910513	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72910516	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72910538	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72910540	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72910544	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72910547	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72910552	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72910554	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72912419	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72912427	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72912445	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72912456	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72912458	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72912473	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72914421	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72914425	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72914428	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72914433	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72914435	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72914437	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72914455	0.81[EUR][1000 genomes]
rs72914847	0.83[EUR][1000 genomes]
rs72914848	0.83[EUR][1000 genomes]
rs72914856	0.83[EUR][1000 genomes]
rs72914857	0.83[EUR][1000 genomes]
rs72914862	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	esv1801141	chr18:44908270-44955409	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv21357	chr18:44925360-44928518	Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3505306	chr18:44925654-44930052	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3505309	chr18:44926229-44930077	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44925000-44929600	Weak transcription	Pancreas	Pancrea

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