Variant report

Variant	rs72914421
Chromosome Location	chr18:44931453-44931454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs55687418	0.83[AMR][1000 genomes]
rs55802477	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55813572	0.83[AMR][1000 genomes]
rs55825078	1.00[AMR][1000 genomes]
rs55892143	0.83[AMR][1000 genomes]
rs56077098	0.83[AMR][1000 genomes]
rs56109704	0.83[AMR][1000 genomes]
rs56287570	1.00[AMR][1000 genomes]
rs56317203	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60893527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908572	0.83[AMR][1000 genomes]
rs72908575	0.83[AMR][1000 genomes]
rs72910504	0.83[AMR][1000 genomes]
rs72910505	0.83[AMR][1000 genomes]
rs72910507	0.83[AMR][1000 genomes]
rs72910512	0.83[AMR][1000 genomes]
rs72910513	0.83[AMR][1000 genomes]
rs72910516	0.83[AMR][1000 genomes]
rs72910538	1.00[AMR][1000 genomes]
rs72910540	1.00[AMR][1000 genomes]
rs72910544	1.00[AMR][1000 genomes]
rs72910547	1.00[AMR][1000 genomes]
rs72910552	1.00[AMR][1000 genomes]
rs72910554	1.00[AMR][1000 genomes]
rs72912419	1.00[AMR][1000 genomes]
rs72912427	1.00[AMR][1000 genomes]
rs72912445	1.00[AMR][1000 genomes]
rs72912456	1.00[AMR][1000 genomes]
rs72912458	1.00[AMR][1000 genomes]
rs72912473	1.00[AMR][1000 genomes]
rs72914425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914455	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	esv1801141	chr18:44908270-44955409	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44930000-44932800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:44930000-44932800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:44930400-44931800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr18:44930400-44931800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr18:44930400-44932000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr18:44930800-44931600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr18:44930800-44931800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr18:44931000-44931600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr18:44931200-44931800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr18:44931200-44931800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr18:44931200-44932200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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