Variant report

Variant	rs1347340
Chromosome Location	chr18:44815363-44815364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10163633	0.92[ASN][1000 genomes]
rs16949034	1.00[GIH][hapmap]
rs16950652	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16950733	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16950744	1.00[CEU][hapmap]
rs16950754	1.00[CEU][hapmap]
rs16950767	1.00[CEU][hapmap]
rs28391188	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28417368	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28455576	0.86[EUR][1000 genomes]
rs28650321	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28737231	0.86[EUR][1000 genomes]
rs8087053	1.00[CEU][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44810400-44819200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr18:44813400-44815400	Weak transcription	Pancreas	Pancrea
3	chr18:44814200-44815600	Bivalent Enhancer	Brain Germinal Matrix	brain
4	chr18:44814800-44815400	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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