Variant report

Variant	rs73973534
Chromosome Location	chr2:167814602-167814603
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55799453	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58609316	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59383854	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59974653	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73969936	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73973533	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73973535	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73973536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73973539	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167813200-167815200	Enhancers	Fetal Intestine Small	intestine
2	chr2:167813800-167815000	Enhancers	Primary T cells from cord blood	blood
3	chr2:167814000-167814800	Enhancers	Primary hematopoietic stem cells	blood
4	chr2:167814000-167814800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:167814000-167814800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:167814200-167815000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:167814200-167815000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:167814200-167815200	Enhancers	Fetal Kidney	kidney
9	chr2:167814200-167817800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr2:167814200-167818000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:167814200-167818200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:167814400-167814800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:167814400-167814800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:167814400-167814800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr2:167814400-167815000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr2:167814400-167815400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:167814400-167818000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr2:167814400-167818000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr2:167814600-167817000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:167814600-167817400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:167814600-167818000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links