Variant report

Variant	rs73979207
Chromosome Location	chr17:17757082-17757083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr17:17757042-17757434	MCF10A-Er-Src	breast:	n/a	chr17:17757234-17757242 chr17:17757234-17757241 chr17:17757313-17757323 chr17:17757234-17757242 chr17:17757314-17757322 chr17:17757313-17757323
2	FOS	chr17:17757027-17757530	MCF10A-Er-Src	breast:	n/a	chr17:17757234-17757242 chr17:17757234-17757241 chr17:17757313-17757323 chr17:17757234-17757242 chr17:17757314-17757322 chr17:17757313-17757323
3	FOS	chr17:17757015-17757530	MCF10A-Er-Src	breast:	n/a	chr17:17757234-17757242 chr17:17757234-17757241 chr17:17757313-17757323 chr17:17757234-17757242 chr17:17757314-17757322 chr17:17757313-17757323

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17753025..17757325-chr17:17758223..17762488,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197815	TF binding region
TOM1L2	TF binding region
ENSG00000197815	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16960878	1.00[EUR][1000 genomes]
rs16961971	1.00[EUR][1000 genomes]
rs16961993	1.00[EUR][1000 genomes]
rs16962003	1.00[EUR][1000 genomes]
rs28528721	1.00[EUR][1000 genomes]
rs28595155	1.00[EUR][1000 genomes]
rs28615278	1.00[EUR][1000 genomes]
rs4924814	1.00[EUR][1000 genomes]
rs4924815	1.00[EUR][1000 genomes]
rs4924816	1.00[EUR][1000 genomes]
rs4924818	1.00[EUR][1000 genomes]
rs4924819	1.00[EUR][1000 genomes]
rs4925107	1.00[EUR][1000 genomes]
rs4925111	1.00[EUR][1000 genomes]
rs4925113	1.00[EUR][1000 genomes]
rs59019513	1.00[EUR][1000 genomes]
rs59064231	1.00[EUR][1000 genomes]
rs59531660	1.00[EUR][1000 genomes]
rs59754425	1.00[EUR][1000 genomes]
rs60492230	1.00[EUR][1000 genomes]
rs73295666	1.00[EUR][1000 genomes]
rs73979203	1.00[EUR][1000 genomes]
rs73979206	1.00[EUR][1000 genomes]
rs73979241	1.00[EUR][1000 genomes]
rs73979242	1.00[EUR][1000 genomes]
rs73979247	1.00[EUR][1000 genomes]
rs73981070	1.00[EUR][1000 genomes]
rs73981075	1.00[EUR][1000 genomes]
rs73981078	1.00[EUR][1000 genomes]
rs7405940	1.00[EUR][1000 genomes]
rs8081943	1.00[EUR][1000 genomes]
rs9889565	1.00[EUR][1000 genomes]
rs9895191	1.00[EUR][1000 genomes]
rs9897573	1.00[EUR][1000 genomes]
rs9898044	1.00[EUR][1000 genomes]
rs9899537	1.00[EUR][1000 genomes]
rs9900884	1.00[EUR][1000 genomes]
rs9900947	1.00[EUR][1000 genomes]
rs9908994	1.00[EUR][1000 genomes]
rs9910488	1.00[EUR][1000 genomes]
rs9944449	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
5	nsv907754	chr17:17573539-17782404	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
6	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
8	nsv833385	chr17:17594037-17765578	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
9	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
10	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
11	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv907758	chr17:17619859-17782404	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
14	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
15	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
16	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
17	nsv907760	chr17:17649423-17782404	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
18	nsv907761	chr17:17649423-17802478	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
19	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
20	nsv907762	chr17:17668071-17802478	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
21	nsv907765	chr17:17682484-17802478	Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
22	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
23	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17744400-17771400	Weak transcription	Fetal Brain Male	brain
2	chr17:17745200-17770600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:17749400-17760200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr17:17750200-17760200	Genic enhancers	Fetal Intestine Small	intestine
5	chr17:17751600-17771600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr17:17752000-17757200	Enhancers	Fetal Heart	heart
7	chr17:17752200-17759600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr17:17753400-17759600	Weak transcription	Pancreas	Pancrea
9	chr17:17753600-17757400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr17:17753600-17758200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr17:17753600-17758400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr17:17753600-17760200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr17:17753800-17758200	Weak transcription	NHDF-Ad	bronchial
14	chr17:17753800-17759600	Weak transcription	Liver	Liver
15	chr17:17754000-17757400	Weak transcription	HepG2	liver
16	chr17:17754000-17758200	Weak transcription	Osteobl	bone
17	chr17:17754000-17763400	Weak transcription	Hela-S3	cervix
18	chr17:17754000-17772000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr17:17754200-17757400	Strong transcription	HSMM	muscle
20	chr17:17754200-17758200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr17:17754200-17758200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr17:17754200-17758400	Weak transcription	Colon Smooth Muscle	Colon
23	chr17:17754200-17758400	Weak transcription	A549	lung
24	chr17:17754200-17759600	Weak transcription	Brain Angular Gyrus	brain
25	chr17:17754200-17764200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr17:17754200-17764600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr17:17754200-17769400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr17:17754200-17771000	Weak transcription	NH-A	brain
29	chr17:17754400-17757400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr17:17754400-17758200	Strong transcription	Fetal Stomach	stomach
31	chr17:17754400-17758400	Weak transcription	Ovary	ovary
32	chr17:17754400-17760200	Enhancers	Fetal Intestine Large	intestine
33	chr17:17754400-17763200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr17:17754400-17763200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr17:17754400-17763200	Weak transcription	Spleen	Spleen
36	chr17:17754400-17769400	Weak transcription	Fetal Brain Female	brain
37	chr17:17754600-17759600	Weak transcription	Gastric	stomach
38	chr17:17754600-17769600	Weak transcription	Thymus	Thymus
39	chr17:17754800-17758800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr17:17754800-17758800	Weak transcription	Right Atrium	heart
41	chr17:17754800-17759400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr17:17754800-17759600	Weak transcription	Psoas Muscle	Psoas
43	chr17:17754800-17769400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr17:17755000-17758200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr17:17755000-17763400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr17:17755000-17765600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr17:17755200-17758000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr17:17755200-17758200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr17:17755200-17758200	Weak transcription	Fetal Lung	lung
50	chr17:17755200-17758400	Weak transcription	Brain Anterior Caudate	brain

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