Variant report

Variant	rs73981911
Chromosome Location	chr17:17267288-17267289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17265082..17270324-chr17:17346925..17351276,6	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10521328	0.92[ASN][1000 genomes]
rs16961593	0.92[ASN][1000 genomes]
rs16961599	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs242251	0.92[ASN][1000 genomes]
rs242252	0.92[ASN][1000 genomes]
rs6502581	0.92[ASN][1000 genomes]
rs6502582	0.92[ASN][1000 genomes]
rs6502583	0.92[ASN][1000 genomes]
rs7210856	0.92[ASN][1000 genomes]
rs7216091	0.92[ASN][1000 genomes]
rs7222318	0.92[ASN][1000 genomes]
rs7223820	0.92[ASN][1000 genomes]
rs73981909	0.92[ASN][1000 genomes]
rs8075306	0.92[ASN][1000 genomes]
rs955893	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv469777	chr17:17127385-17272698	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv482546	chr17:17127385-17272698	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17264600-17267600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr17:17265000-17268200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr17:17265000-17268400	Enhancers	Fetal Muscle Leg	muscle
4	chr17:17265200-17267600	Enhancers	Adipose Nuclei	Adipose
5	chr17:17265200-17268400	Enhancers	Fetal Thymus	thymus
6	chr17:17265600-17267600	Weak transcription	Fetal Brain Female	brain
7	chr17:17265600-17267800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr17:17266200-17267600	Weak transcription	HSMM	muscle
9	chr17:17266200-17268200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:17266400-17267400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr17:17266400-17267600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr17:17266400-17267800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr17:17266400-17268200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr17:17266400-17268200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr17:17266600-17267600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr17:17266600-17267600	Enhancers	Pancreas	Pancrea
17	chr17:17266600-17267600	Enhancers	NHDF-Ad	bronchial
18	chr17:17266600-17267800	Enhancers	Right Ventricle	heart
19	chr17:17266600-17267800	Enhancers	Hela-S3	cervix
20	chr17:17266600-17268000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr17:17266600-17268000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr17:17266600-17268200	Enhancers	Thymus	Thymus
23	chr17:17266600-17268400	Enhancers	Spleen	Spleen
24	chr17:17266800-17267400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr17:17266800-17267400	Enhancers	Gastric	stomach
26	chr17:17266800-17267400	Enhancers	Lung	lung
27	chr17:17266800-17267400	Enhancers	A549	lung
28	chr17:17266800-17267600	Enhancers	Fetal Lung	lung
29	chr17:17266800-17267600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr17:17266800-17267800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
31	chr17:17266800-17268000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
32	chr17:17267000-17267600	Enhancers	H1 Cell Line	embryonic stem cell
33	chr17:17267000-17267600	Enhancers	Esophagus	oesophagus
34	chr17:17267000-17268000	Enhancers	Duodenum Mucosa	Duodenum
35	chr17:17267000-17268000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
36	chr17:17267000-17268000	Flanking Active TSS	HepG2	liver
37	chr17:17267000-17268200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr17:17267200-17267400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
39	chr17:17267200-17267400	Enhancers	Left Ventricle	heart
40	chr17:17267200-17267400	Enhancers	HSMMtube	muscle
41	chr17:17267200-17267600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr17:17267200-17267600	Enhancers	NHLF	lung
43	chr17:17267200-17267800	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
44	chr17:17267200-17267800	Bivalent Enhancer	Fetal Intestine Small	intestine
45	chr17:17267200-17267800	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr17:17267200-17267800	Enhancers	Dnd41	blood
47	chr17:17267200-17268000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr17:17267200-17268000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr17:17267200-17268000	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr17:17267200-17268000	Enhancers	Right Atrium	heart

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