Variant report

Variant	rs955893
Chromosome Location	chr17:17273058-17273059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10521328	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961593	0.85[ASN][1000 genomes]
rs16961599	0.85[ASN][1000 genomes]
rs242251	0.85[ASN][1000 genomes]
rs242252	0.85[ASN][1000 genomes]
rs6502581	1.00[ASN][1000 genomes]
rs6502582	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502583	1.00[ASN][1000 genomes]
rs7210856	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216091	1.00[ASN][1000 genomes]
rs7222318	1.00[ASN][1000 genomes]
rs7223820	1.00[ASN][1000 genomes]
rs73981909	0.85[ASN][1000 genomes]
rs73981911	0.92[ASN][1000 genomes]
rs8075306	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
3	esv275128	chr17:17269758-17275754	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17267800-17279400	Weak transcription	Right Ventricle	heart
2	chr17:17270400-17278800	Weak transcription	Right Atrium	heart
3	chr17:17271600-17273200	Weak transcription	HSMM	muscle
4	chr17:17272600-17274200	Enhancers	HepG2	liver
5	chr17:17272800-17273400	Enhancers	NHDF-Ad	bronchial
6	chr17:17272800-17273600	Enhancers	Osteobl	bone
7	chr17:17272800-17275200	Enhancers	Fetal Intestine Large	intestine
8	chr17:17273000-17273400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr17:17273000-17273400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:17273000-17273400	Enhancers	Fetal Intestine Small	intestine
11	chr17:17273000-17273600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr17:17273000-17274000	Enhancers	Thymus	Thymus
13	chr17:17273000-17274200	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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