Variant report

Variant	rs73981913
Chromosome Location	chr17:17269090-17269091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55946121	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73981914	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73981917	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv469777	chr17:17127385-17272698	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv482546	chr17:17127385-17272698	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17267200-17270000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr17:17267800-17279400	Weak transcription	Right Ventricle	heart
3	chr17:17268000-17270000	Weak transcription	Right Atrium	heart
4	chr17:17268000-17270000	Weak transcription	NHDF-Ad	bronchial
5	chr17:17268000-17271200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr17:17268200-17269800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr17:17268200-17269800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr17:17268200-17270000	Weak transcription	HepG2	liver
9	chr17:17268200-17271000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr17:17268200-17272800	Weak transcription	Fetal Intestine Large	intestine
11	chr17:17268800-17270400	ZNF genes & repeats	Fetal Thymus	thymus
12	chr17:17269000-17269200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
13	chr17:17269000-17269400	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr17:17269000-17269800	ZNF genes & repeats	Dnd41	blood
15	chr17:17269000-17270400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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