Variant report

Variant	rs73981917
Chromosome Location	chr17:17280487-17280488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17279494..17281597-chr17:17286112..17288902,2	MCF-7	breast:
2	chr17:17278849..17281558-chr17:17290486..17292840,2	K562	blood:

Variant related genes	Relation type
ENSG00000215030	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55946121	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73981913	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73981914	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17274200-17282200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr17:17277200-17280600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr17:17279000-17281000	Enhancers	Adipose Nuclei	Adipose
4	chr17:17279200-17281400	Enhancers	Fetal Brain Male	brain
5	chr17:17279200-17281600	Enhancers	HepG2	liver
6	chr17:17279400-17280600	Enhancers	Left Ventricle	heart
7	chr17:17279400-17280600	Enhancers	Right Ventricle	heart
8	chr17:17279400-17280800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr17:17279400-17280800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr17:17279400-17281400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr17:17279400-17282400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr17:17279800-17281000	Enhancers	Fetal Lung	lung
13	chr17:17279800-17281000	Enhancers	Fetal Muscle Leg	muscle
14	chr17:17279800-17281000	Enhancers	Placenta	Placenta
15	chr17:17280000-17281400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr17:17280200-17280600	Weak transcription	Fetal Brain Female	brain
17	chr17:17280400-17280600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr17:17280400-17280800	Enhancers	Brain Germinal Matrix	brain
19	chr17:17280400-17280800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr17:17280400-17281400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr17:17280400-17283200	Weak transcription	Lung	lung

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