Variant report

Variant	rs73982888
Chromosome Location	chr2:206217229-206217230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10202921	1.00[EUR][1000 genomes]
rs10207629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58081712	1.00[EUR][1000 genomes]
rs73059249	1.00[EUR][1000 genomes]
rs73982890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206186800-206217400	Weak transcription	HSMM	muscle
2	chr2:206197600-206240600	Weak transcription	Aorta	Aorta
3	chr2:206213000-206222600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:206213000-206223200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:206213200-206222600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:206216200-206218600	Enhancers	NHDF-Ad	bronchial
7	chr2:206216400-206218600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:206216800-206218000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:206216800-206218200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:206216800-206218200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr2:206217000-206218200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:206217000-206218200	Enhancers	NHEK	skin
13	chr2:206217000-206218200	Enhancers	Osteobl	bone
14	chr2:206217200-206217600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:206217200-206218000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:206217200-206218000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:206217200-206218000	Enhancers	NH-A	brain
18	chr2:206217200-206218200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:206217200-206218200	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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