Variant report

Variant	rs73982890
Chromosome Location	chr2:206225938-206225939
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:206225154..206226804-chr2:206253641..206255216,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10202921	1.00[EUR][1000 genomes]
rs10207629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58081712	1.00[EUR][1000 genomes]
rs73059249	1.00[EUR][1000 genomes]
rs73982888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206197600-206240600	Weak transcription	Aorta	Aorta
2	chr2:206223200-206228800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:206223800-206228000	Weak transcription	HSMM	muscle
4	chr2:206223800-206229000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:206224000-206229000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:206224000-206231200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:206224200-206226400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:206224200-206228600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:206224200-206228800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:206224200-206230200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:206224400-206226200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:206224400-206227800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr2:206224400-206228800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:206224600-206227400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:206225400-206227000	Enhancers	HMEC	breast
16	chr2:206225400-206227200	Enhancers	NHEK	skin
17	chr2:206225600-206226200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:206225800-206226000	Enhancers	NHDF-Ad	bronchial
19	chr2:206225800-206226200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:206225800-206226600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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