Variant report

Variant	rs73984119
Chromosome Location	chr17:19665828-19665829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:19416820..19417560-chr17:19665539..19666441,2	MCF-7	breast:
2	chr17:19654497..19661140-chr17:19661473..19671609,12	MCF-7	breast:
3	chr17:19656623..19657451-chr17:19665588..19666274,2	MCF-7	breast:
4	chr17:19264857..19267680-chr17:19664329..19666250,2	K562	blood:
5	chr11:67398077..67399002-chr17:19665643..19666146,2	MCF-7	breast:
6	chr17:19662944..19666237-chr17:19667873..19670439,4	MCF-7	breast:
7	chr17:19665481..19667354-chr17:19668063..19669957,3	MCF-7	breast:
8	chr17:19264651..19266325-chr17:19665635..19668474,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108641	Chromatin interaction
ENSG00000230607	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73980707	1.00[AMR][1000 genomes]
rs9892416	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv1063892	chr17:19564634-19808485	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv907866	chr17:19582533-19697976	Weak transcription Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv907867	chr17:19603060-19697976	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv1793043	chr17:19604821-19670329	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1061489	chr17:19654704-19705026	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19657400-19673000	Weak transcription	HUVEC	blood vessel
2	chr17:19657400-19674000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr17:19660400-19673800	Weak transcription	Fetal Intestine Small	intestine
4	chr17:19664200-19666200	Enhancers	Fetal Muscle Leg	muscle
5	chr17:19664200-19674000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr17:19664800-19666200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr17:19665200-19666600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr17:19665400-19666000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr17:19665400-19666200	Enhancers	Brain Anterior Caudate	brain
10	chr17:19665400-19666400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:19665400-19666400	Enhancers	HepG2	liver
12	chr17:19665600-19666000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:19665600-19666000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr17:19665600-19666000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr17:19665600-19666000	Enhancers	Adipose Nuclei	Adipose
16	chr17:19665600-19666000	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr17:19665600-19666000	Enhancers	Fetal Heart	heart
18	chr17:19665600-19666000	Enhancers	Fetal Lung	lung
19	chr17:19665600-19666000	Bivalent Enhancer	Placenta	Placenta
20	chr17:19665600-19666000	Flanking Active TSS	A549	lung
21	chr17:19665600-19666200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr17:19665600-19666200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr17:19665600-19666200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr17:19665600-19666200	Enhancers	Primary B cells from peripheral blood	blood
25	chr17:19665600-19666200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr17:19665600-19666200	Bivalent Enhancer	Fetal Stomach	stomach
27	chr17:19665600-19666200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr17:19665600-19666200	Enhancers	Stomach Mucosa	stomach
29	chr17:19665600-19666200	Enhancers	NH-A	brain
30	chr17:19665600-19666400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr17:19665600-19666400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr17:19665600-19666400	Enhancers	Brain Cingulate Gyrus	brain
33	chr17:19665600-19666400	Enhancers	Colon Smooth Muscle	Colon
34	chr17:19665800-19666000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr17:19665800-19666000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr17:19665800-19666000	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr17:19665800-19666000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr17:19665800-19666000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr17:19665800-19666000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr17:19665800-19666000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr17:19665800-19666000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr17:19665800-19666000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr17:19665800-19666000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr17:19665800-19666000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr17:19665800-19666000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
46	chr17:19665800-19666000	Enhancers	Fetal Intestine Large	intestine
47	chr17:19665800-19666000	Enhancers	Left Ventricle	heart
48	chr17:19665800-19666000	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr17:19665800-19666000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
50	chr17:19665800-19666000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links