Variant report

Variant	rs9892416
Chromosome Location	chr17:19665596-19665597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73980707	1.00[AMR][1000 genomes]
rs73984119	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv1063892	chr17:19564634-19808485	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv907866	chr17:19582533-19697976	Weak transcription Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv907867	chr17:19603060-19697976	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv1793043	chr17:19604821-19670329	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1061489	chr17:19654704-19705026	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19657400-19665800	Weak transcription	Gastric	stomach
2	chr17:19657400-19673000	Weak transcription	HUVEC	blood vessel
3	chr17:19657400-19674000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr17:19659600-19665800	Weak transcription	Spleen	Spleen
5	chr17:19660400-19665600	Weak transcription	Fetal Heart	heart
6	chr17:19660400-19673800	Weak transcription	Fetal Intestine Small	intestine
7	chr17:19663200-19665800	Weak transcription	Pancreas	Pancrea
8	chr17:19663600-19665600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:19664200-19666200	Enhancers	Fetal Muscle Leg	muscle
10	chr17:19664200-19674000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr17:19664800-19666200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr17:19665200-19666600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr17:19665400-19665600	Enhancers	A549	lung
14	chr17:19665400-19666000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr17:19665400-19666200	Enhancers	Brain Anterior Caudate	brain
16	chr17:19665400-19666400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr17:19665400-19666400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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