Variant report

Variant	rs74009099
Chromosome Location	chr15:42846279-42846280
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42840002..42842496-chr15:42846261..42849092,2	MCF-7	breast:
2	chr15:42844616..42847255-chr15:42852091..42854102,2	K562	blood:

Variant related genes	Relation type
ENSG00000180979	Chromatin interaction
ENSG00000137814	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28364401	1.00[AMR][1000 genomes]
rs28364417	1.00[AMR][1000 genomes]
rs57481952	1.00[AMR][1000 genomes]
rs60285238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74009101	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74009211	1.00[AMR][1000 genomes]
rs74009217	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42841600-42850800	Weak transcription	Pancreas	Pancrea
2	chr15:42841600-42851000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:42841600-42851200	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:42841600-42851600	Weak transcription	Lung	lung
5	chr15:42841600-42852000	Weak transcription	Gastric	stomach
6	chr15:42841600-42853600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:42841600-42854200	Weak transcription	Aorta	Aorta
8	chr15:42841600-42854200	Weak transcription	Esophagus	oesophagus
9	chr15:42841600-42854200	Weak transcription	Spleen	Spleen
10	chr15:42841600-42866800	Weak transcription	Stomach Mucosa	stomach
11	chr15:42841800-42848800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:42841800-42850400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:42841800-42857000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:42841800-42867000	Weak transcription	Ovary	ovary
15	chr15:42842200-42848600	Weak transcription	Fetal Intestine Large	intestine
16	chr15:42842200-42850200	Weak transcription	Primary T cells from cord blood	blood
17	chr15:42842200-42850400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:42842200-42850800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:42842200-42851000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr15:42842200-42851400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:42842200-42853000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:42842200-42854200	Weak transcription	Right Ventricle	heart
23	chr15:42842200-42856000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr15:42842200-42867000	Weak transcription	Psoas Muscle	Psoas
25	chr15:42842400-42848000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:42842400-42848800	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:42842400-42849800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:42842400-42849800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:42842400-42849800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:42842400-42849800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr15:42842400-42850400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:42842400-42850400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr15:42842400-42850600	Weak transcription	Fetal Intestine Small	intestine
34	chr15:42842400-42850800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr15:42842400-42850800	Weak transcription	HMEC	breast
36	chr15:42842400-42851000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:42842400-42851000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:42842400-42851000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:42842400-42851000	Weak transcription	Liver	Liver
40	chr15:42842400-42851000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr15:42842400-42851200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:42842400-42851400	Weak transcription	Placenta	Placenta
43	chr15:42842400-42851400	Weak transcription	Left Ventricle	heart
44	chr15:42842400-42851400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr15:42842400-42851400	Weak transcription	HSMMtube	muscle
46	chr15:42842400-42851600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:42842400-42851600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr15:42842400-42851600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr15:42842400-42851600	Weak transcription	NH-A	brain
50	chr15:42842400-42852000	Weak transcription	Rectal Smooth Muscle	rectum

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