Variant report

Variant	rs74009101
Chromosome Location	chr15:42895210-42895211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42893940..42896262-chr15:42899451..42901579,2	K562	blood:
2	chr15:42893466..42896264-chr15:42911429..42914535,3	K562	blood:
3	chr15:42893466..42896264-chr15:42911429..42914221,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28364401	1.00[AMR][1000 genomes]
rs28364417	1.00[AMR][1000 genomes]
rs57481952	1.00[AMR][1000 genomes]
rs60285238	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74009099	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74009211	1.00[AMR][1000 genomes]
rs74009217	1.00[AMR][1000 genomes]
rs74009222	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42874200-42896600	Weak transcription	Hela-S3	cervix
2	chr15:42874400-42895800	Weak transcription	Thymus	Thymus
3	chr15:42874400-42900200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:42874400-42900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:42874400-42900200	Weak transcription	Lung	lung
6	chr15:42874600-42896200	Weak transcription	Primary T cells from cord blood	blood
7	chr15:42874800-42929800	Weak transcription	Fetal Brain Female	brain
8	chr15:42876800-42900200	Weak transcription	HMEC	breast
9	chr15:42877000-42896000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:42877000-42897000	Weak transcription	Right Ventricle	heart
11	chr15:42877000-42900200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:42877200-42911200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:42879800-42898200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:42880800-42896800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:42881000-42896800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:42883200-42897000	Weak transcription	Left Ventricle	heart
17	chr15:42883200-42897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:42883800-42896200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:42884200-42897200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr15:42886600-42897600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:42887600-42897800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:42888000-42897000	Weak transcription	Psoas Muscle	Psoas
23	chr15:42888000-42897400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr15:42888400-42897000	Weak transcription	Placenta	Placenta
25	chr15:42888400-42897400	Weak transcription	Aorta	Aorta
26	chr15:42888600-42897000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:42888600-42897200	Weak transcription	NHDF-Ad	bronchial
28	chr15:42888600-42897800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:42888600-42901200	Weak transcription	Fetal Brain Male	brain
30	chr15:42888800-42897200	Weak transcription	HSMM	muscle
31	chr15:42888800-42901000	Weak transcription	Brain Angular Gyrus	brain
32	chr15:42888800-42909600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:42888800-42911000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:42889000-42897000	Weak transcription	Brain Hippocampus Middle	brain
35	chr15:42889000-42897200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:42889000-42897200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr15:42889000-42897200	Weak transcription	HSMMtube	muscle
38	chr15:42889400-42896200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr15:42889600-42897200	Weak transcription	Fetal Lung	lung
40	chr15:42889600-42897600	Weak transcription	Fetal Kidney	kidney
41	chr15:42889600-42903600	Weak transcription	Ovary	ovary
42	chr15:42892400-42896400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:42893800-42895800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:42894200-42895800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:42894200-42896000	ZNF genes & repeats	GM12878-XiMat	blood
46	chr15:42894200-42896400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:42894400-42895800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr15:42894400-42897400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:42894600-42895400	Genic enhancers	Stomach Smooth Muscle	stomach
50	chr15:42894800-42896000	Enhancers	Primary B cells from peripheral blood	blood

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