Variant report

Variant	rs74013558
Chromosome Location	chr15:54544740-54544741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:54539853..54542603-chr15:54543505..54545190,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs28489407	1.00[AMR][1000 genomes]
rs28633095	1.00[AMR][1000 genomes]
rs55891019	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56206354	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56813223	1.00[AMR][1000 genomes]
rs58116384	1.00[AMR][1000 genomes]
rs58333885	1.00[AMR][1000 genomes]
rs59824714	1.00[AMR][1000 genomes]
rs59907889	1.00[AMR][1000 genomes]
rs59938768	1.00[AMR][1000 genomes]
rs60076059	1.00[AMR][1000 genomes]
rs74013527	1.00[AMR][1000 genomes]
rs74013530	1.00[AMR][1000 genomes]
rs74013531	1.00[AMR][1000 genomes]
rs74013533	1.00[AMR][1000 genomes]
rs74013534	1.00[AMR][1000 genomes]
rs74013535	1.00[AMR][1000 genomes]
rs74013537	1.00[AMR][1000 genomes]
rs74013538	1.00[AMR][1000 genomes]
rs74013539	1.00[AMR][1000 genomes]
rs74013540	1.00[AMR][1000 genomes]
rs74013541	1.00[AMR][1000 genomes]
rs74013542	1.00[AMR][1000 genomes]
rs74013544	1.00[AMR][1000 genomes]
rs74013545	1.00[AMR][1000 genomes]
rs74013548	1.00[AMR][1000 genomes]
rs74013549	1.00[AMR][1000 genomes]
rs74013550	1.00[AMR][1000 genomes]
rs74013551	1.00[AMR][1000 genomes]
rs74013552	1.00[AMR][1000 genomes]
rs74013553	1.00[AMR][1000 genomes]
rs74013554	1.00[AMR][1000 genomes]
rs74013555	1.00[AMR][1000 genomes]
rs74013556	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013557	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013568	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013569	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013570	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013571	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013573	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013575	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013577	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013578	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013579	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013581	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013582	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013583	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013584	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013585	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013586	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013587	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013588	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013589	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013592	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013595	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013598	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015103	1.00[AMR][1000 genomes]
rs74015117	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015118	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015121	1.00[AMR][1000 genomes]
rs74015133	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1043666	chr15:54415970-54548495	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54519000-54554400	Weak transcription	Aorta	Aorta
2	chr15:54519400-54549600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:54531400-54544800	Weak transcription	Fetal Lung	lung
4	chr15:54542600-54549800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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