Variant report

Variant	rs74013568
Chromosome Location	chr15:54556189-54556190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:54556107-54556391	GM12891	blood:	n/a	chr15:54556279-54556292 chr15:54556277-54556286 chr15:54556280-54556293
2	SPI1	chr15:54556185-54556369	GM12891	blood:	n/a	chr15:54556279-54556292 chr15:54556277-54556286 chr15:54556280-54556293
3	SPI1	chr15:54556147-54556388	GM12878	blood:	n/a	chr15:54556279-54556292 chr15:54556277-54556286 chr15:54556280-54556293

Variant related genes	Relation type
UNC13C	TF binding region

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs28489407	1.00[AMR][1000 genomes]
rs28633095	1.00[AMR][1000 genomes]
rs55891019	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56206354	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56813223	1.00[AMR][1000 genomes]
rs58116384	1.00[AMR][1000 genomes]
rs58333885	1.00[AMR][1000 genomes]
rs59824714	1.00[AMR][1000 genomes]
rs59907889	1.00[AMR][1000 genomes]
rs59938768	1.00[AMR][1000 genomes]
rs60076059	1.00[AMR][1000 genomes]
rs74013527	1.00[AMR][1000 genomes]
rs74013530	1.00[AMR][1000 genomes]
rs74013531	1.00[AMR][1000 genomes]
rs74013533	1.00[AMR][1000 genomes]
rs74013534	1.00[AMR][1000 genomes]
rs74013535	1.00[AMR][1000 genomes]
rs74013537	1.00[AMR][1000 genomes]
rs74013538	1.00[AMR][1000 genomes]
rs74013539	1.00[AMR][1000 genomes]
rs74013540	1.00[AMR][1000 genomes]
rs74013541	1.00[AMR][1000 genomes]
rs74013542	1.00[AMR][1000 genomes]
rs74013544	1.00[AMR][1000 genomes]
rs74013545	1.00[AMR][1000 genomes]
rs74013548	1.00[AMR][1000 genomes]
rs74013549	1.00[AMR][1000 genomes]
rs74013550	1.00[AMR][1000 genomes]
rs74013551	1.00[AMR][1000 genomes]
rs74013552	1.00[AMR][1000 genomes]
rs74013553	1.00[AMR][1000 genomes]
rs74013554	1.00[AMR][1000 genomes]
rs74013555	1.00[AMR][1000 genomes]
rs74013556	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013557	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013558	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013569	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013570	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013571	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013573	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013575	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013578	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013579	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013581	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013582	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013583	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013584	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013585	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013586	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013587	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013588	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013589	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013592	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013595	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013598	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015103	1.00[AMR][1000 genomes]
rs74015117	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015118	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015121	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015133	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3362314	chr15:54551360-54556658	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung

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