Variant report

Variant	rs74015355
Chromosome Location	chr15:56285695-56285696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:152008878..152009756-chr15:56285598..56286362,2	Hela-S3	cervix:
2	chr14:55737712..55738366-chr15:56285235..56286222,2	Hela-S3	cervix:
3	chr1:233748980..233749780-chr15:56285541..56286277,2	Hela-S3	cervix:
4	chr1:100503143..100503837-chr15:56285483..56286241,2	Hela-S3	cervix:
5	chr1:145381291..145384278-chr15:56284107..56286728,2	MCF-7	breast:
6	chr15:56285499..56287418-chr15:56534884..56536553,2	K562	blood:
7	chr15:56284455..56287261-chr15:56299264..56302045,2	MCF-7	breast:
8	chr15:56282050..56287467-chr15:56534024..56538662,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000201558	Chromatin interaction
ENSG00000233396	Chromatin interaction
ENSG00000156875	Chromatin interaction
ENSG00000181827	Chromatin interaction
ENSG00000135750	Chromatin interaction
ENSG00000178974	Chromatin interaction
ENSG00000151575	Chromatin interaction
ENSG00000163191	Chromatin interaction
ENSG00000258413	Chromatin interaction
ENSG00000230183	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12324816	0.86[AFR][1000 genomes]
rs12594988	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16976661	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55730141	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55951039	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56396104	0.93[ASN][1000 genomes]
rs61188362	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72734396	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72734397	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72736404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736412	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904245	chr15:56229760-56324451	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv457159	chr15:56255774-56321854	Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv569543	chr15:56255774-56321854	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv457160	chr15:56273446-56320235	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
6	nsv569544	chr15:56273446-56320235	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
7	nsv457161	chr15:56274443-56324451	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
8	nsv569545	chr15:56274443-56324451	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
9	nsv569546	chr15:56274443-56337527	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56283800-56286800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:56284000-56286800	Active TSS	Right Atrium	heart
3	chr15:56284000-56287000	Active TSS	NHLF	lung
4	chr15:56284200-56286800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:56284200-56286800	Active TSS	Fetal Muscle Trunk	muscle
6	chr15:56284200-56287200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:56284400-56286400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:56284400-56286400	Active TSS	Stomach Smooth Muscle	stomach
9	chr15:56284400-56286400	Active TSS	NHEK	skin
10	chr15:56284400-56286600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:56284400-56286600	Active TSS	Aorta	Aorta
12	chr15:56284400-56286800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:56284400-56286800	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr15:56284600-56286200	Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr15:56284600-56286200	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr15:56284600-56286200	Active TSS	Thymus	Thymus
17	chr15:56284600-56286400	Active TSS	Brain Angular Gyrus	brain
18	chr15:56284600-56286400	Active TSS	HSMMtube	muscle
19	chr15:56284600-56286600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:56284600-56286600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:56284600-56286600	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr15:56284600-56286600	Active TSS	A549	lung
23	chr15:56284600-56286800	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr15:56284600-56286800	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr15:56284600-56286800	Active TSS	Fetal Stomach	stomach
26	chr15:56284600-56286800	Active TSS	Psoas Muscle	Psoas
27	chr15:56284600-56286800	Active TSS	Right Ventricle	heart
28	chr15:56284600-56286800	Active TSS	HSMM	muscle
29	chr15:56284600-56287000	Active TSS	Placenta	Placenta
30	chr15:56284600-56287000	Active TSS	NHDF-Ad	bronchial
31	chr15:56284800-56286200	Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr15:56284800-56286200	Active TSS	GM12878-XiMat	blood
33	chr15:56284800-56286200	Active TSS	HepG2	liver
34	chr15:56284800-56286400	Active TSS	Primary hematopoietic stem cells	blood
35	chr15:56284800-56286400	Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr15:56284800-56286400	Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr15:56284800-56286400	Active TSS	Brain Anterior Caudate	brain
38	chr15:56284800-56286400	Active TSS	Brain Hippocampus Middle	brain
39	chr15:56284800-56286400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
40	chr15:56284800-56286400	Active TSS	Fetal Lung	lung
41	chr15:56284800-56286400	Active TSS	HMEC	breast
42	chr15:56284800-56286600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:56284800-56286600	Active TSS	Muscle Satellite Cultured Cells	--
44	chr15:56284800-56286600	Active TSS	Ovary	ovary
45	chr15:56284800-56286800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:56284800-56286800	Active TSS	Brain Cingulate Gyrus	brain
47	chr15:56284800-56286800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:56284800-56287000	Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr15:56285000-56286200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr15:56285000-56286200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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