Variant report

Variant	rs74016154
Chromosome Location	chr15:57600516-57600517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:57599033..57602011-chr15:57602301..57604910,2	MCF-7	breast:
2	chr15:57597621..57600563-chr15:57604167..57606534,3	K562	blood:
3	chr15:57596677..57601983-chr15:57611239..57618411,9	K562	blood:
4	chr15:57597689..57601400-chr15:57611239..57614125,3	K562	blood:
5	chr15:57598904..57601336-chr15:57602570..57606633,5	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCF12-1	chr15:57599740-57600717	XLOC_011264

No data

Variant related genes	Relation type
ENSG00000260172	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16977281	1.00[AMR][1000 genomes]
rs16977359	1.00[AMR][1000 genomes]
rs16977360	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28442130	1.00[AMR][1000 genomes]
rs8035840	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57598600-57600800	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr15:57599000-57600600	Enhancers	Fetal Lung	lung
3	chr15:57599000-57600800	Enhancers	HepG2	liver
4	chr15:57599000-57603000	Weak transcription	K562	blood
5	chr15:57599400-57600600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:57599400-57600600	Enhancers	A549	lung
7	chr15:57599400-57601200	Enhancers	Fetal Intestine Small	intestine
8	chr15:57599400-57601800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr15:57599400-57602600	Weak transcription	Brain Germinal Matrix	brain
10	chr15:57599400-57604600	Weak transcription	Right Ventricle	heart
11	chr15:57599400-57605000	Weak transcription	Fetal Brain Female	brain
12	chr15:57599400-57612800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:57599600-57600600	Enhancers	Duodenum Mucosa	Duodenum
14	chr15:57599600-57600600	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr15:57599600-57601200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:57599600-57601400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr15:57599600-57602000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr15:57599600-57602000	Weak transcription	Placenta	Placenta
19	chr15:57599600-57602400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:57599600-57602400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr15:57599600-57603800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:57599600-57604600	Weak transcription	Fetal Thymus	thymus
23	chr15:57599600-57604600	Weak transcription	Left Ventricle	heart
24	chr15:57599600-57604600	Weak transcription	Pancreas	Pancrea
25	chr15:57599600-57604600	Weak transcription	Psoas Muscle	Psoas
26	chr15:57599600-57604600	Weak transcription	Right Atrium	heart
27	chr15:57599600-57604800	Weak transcription	Fetal Brain Male	brain
28	chr15:57599600-57612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:57599600-57612800	Weak transcription	GM12878-XiMat	blood
30	chr15:57599600-57614200	Weak transcription	Small Intestine	intestine
31	chr15:57599600-57617800	Weak transcription	Spleen	Spleen
32	chr15:57599800-57600600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:57599800-57603000	Strong transcription	Primary B cells from cord blood	blood
34	chr15:57600000-57602400	Weak transcription	Fetal Muscle Leg	muscle
35	chr15:57600000-57602600	Weak transcription	Gastric	stomach
36	chr15:57600000-57604400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:57600200-57602000	Weak transcription	Fetal Intestine Large	intestine
38	chr15:57600200-57602600	Strong transcription	Primary B cells from peripheral blood	blood
39	chr15:57600200-57603000	Weak transcription	Stomach Mucosa	stomach
40	chr15:57600200-57604400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:57600200-57605000	Weak transcription	Fetal Kidney	kidney
42	chr15:57600400-57600800	Weak transcription	Colonic Mucosa	Colon
43	chr15:57600400-57602000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr15:57600400-57602000	Weak transcription	Fetal Stomach	stomach
45	chr15:57600400-57602200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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