Variant report

Variant	rs16977359
Chromosome Location	chr15:57566348-57566349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16977281	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16977360	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28442130	1.00[AMR][1000 genomes]
rs74016154	1.00[AMR][1000 genomes]
rs8035840	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv526342	chr15:57565859-57597280	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57520400-57576000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:57522800-57585000	Strong transcription	Fetal Thymus	thymus
3	chr15:57526600-57574200	Weak transcription	Hela-S3	cervix
4	chr15:57533600-57568800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:57536800-57574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:57537800-57598200	Weak transcription	Colonic Mucosa	Colon
7	chr15:57539400-57574800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:57544600-57574800	Weak transcription	Fetal Brain Male	brain
9	chr15:57546000-57580600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:57548200-57578000	Weak transcription	Fetal Heart	heart
11	chr15:57552200-57573200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:57552200-57588600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:57552400-57578600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:57553200-57585000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:57554200-57568800	Strong transcription	Primary T cells from cord blood	blood
16	chr15:57556200-57580600	Weak transcription	Stomach Mucosa	stomach
17	chr15:57557000-57584600	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:57557600-57578000	Weak transcription	Pancreas	Pancrea
19	chr15:57557600-57588600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:57558200-57573600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:57562400-57567800	Strong transcription	Fetal Intestine Large	intestine
22	chr15:57562400-57568600	Strong transcription	Primary hematopoietic stem cells	blood
23	chr15:57562600-57569400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr15:57562600-57575600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:57562600-57578000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:57562600-57584200	Strong transcription	Fetal Muscle Trunk	muscle
27	chr15:57562600-57584600	Strong transcription	Fetal Muscle Leg	muscle
28	chr15:57563200-57572000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr15:57563400-57568600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:57563400-57569600	Strong transcription	Duodenum Mucosa	Duodenum
31	chr15:57563800-57568600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:57563800-57568600	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr15:57564000-57582400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:57564000-57583600	Strong transcription	Dnd41	blood
35	chr15:57564200-57568400	Strong transcription	Primary B cells from cord blood	blood
36	chr15:57564200-57568800	Strong transcription	K562	blood
37	chr15:57564400-57566400	Strong transcription	GM12878-XiMat	blood
38	chr15:57564400-57568000	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr15:57564400-57568400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr15:57564400-57568600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:57564400-57568600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr15:57564400-57568800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr15:57564400-57568800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr15:57564400-57569400	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr15:57564600-57568400	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:57564600-57568600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:57564600-57568600	Strong transcription	NH-A	brain
48	chr15:57564600-57568800	Strong transcription	Liver	Liver
49	chr15:57564800-57567400	Strong transcription	A549	lung
50	chr15:57564800-57568000	Strong transcription	HepG2	liver

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