Variant report

Variant	rs74017496
Chromosome Location	chr15:56534245-56534246
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr15:56534079-56534492	K562	blood:	n/a	chr15:56534313-56534333
2	IRF1	chr15:56533818-56534469	K562	blood:	n/a	chr15:56534034-56534048 chr15:56534037-56534049 chr15:56534030-56534050 chr15:56534038-56534049 chr15:56534313-56534333 chr15:56534036-56534049 chr15:56534035-56534049 chr15:56534038-56534048 chr15:56534038-56534052 chr15:56534037-56534049 chr15:56534031-56534043 chr15:56534039-56534050
3	MXI1	chr15:56534035-56534283	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56282050..56287467-chr15:56534024..56538662,8	MCF-7	breast:

Variant related genes	Relation type
TEX9	TF binding region
ENSG00000069869	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs74017474	0.87[AFR][1000 genomes]
rs74017495	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3388652	chr15:56534210-56537808	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56508000-56534400	Weak transcription	Fetal Heart	heart
2	chr15:56514000-56535000	Weak transcription	Pancreas	Pancrea
3	chr15:56514800-56534800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:56524600-56534800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:56524800-56534800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:56524800-56534800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:56524800-56534800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:56524800-56534800	Weak transcription	Small Intestine	intestine
9	chr15:56524800-56535000	Weak transcription	Esophagus	oesophagus
10	chr15:56525400-56534800	Weak transcription	Placenta	Placenta
11	chr15:56525400-56535000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:56525600-56535000	Weak transcription	Lung	lung
13	chr15:56529400-56535000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:56530600-56534600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr15:56531400-56535000	Weak transcription	Left Ventricle	heart
16	chr15:56532000-56537000	Active TSS	GM12878-XiMat	blood
17	chr15:56532400-56537000	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr15:56532600-56534400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:56532600-56537000	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr15:56532600-56537000	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr15:56532600-56537000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:56532600-56537000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:56532600-56537000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:56532600-56537000	Active TSS	HMEC	breast
25	chr15:56533000-56537000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:56533200-56534600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:56533200-56534800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr15:56533200-56535200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:56533200-56536800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:56533200-56537000	Active TSS	H1 Cell Line	embryonic stem cell
31	chr15:56533200-56537000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:56533200-56537200	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr15:56533400-56534400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr15:56533400-56534600	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr15:56533400-56534600	Flanking Active TSS	HUVEC	blood vessel
36	chr15:56533400-56534800	Enhancers	Liver	Liver
37	chr15:56533400-56534800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr15:56533400-56534800	Enhancers	Fetal Intestine Small	intestine
39	chr15:56533400-56535200	Active TSS	Fetal Brain Male	brain
40	chr15:56533400-56536200	Active TSS	HSMMtube	muscle
41	chr15:56533400-56536400	Active TSS	NHEK	skin
42	chr15:56533400-56536600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:56533400-56536800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:56533400-56536800	Active TSS	K562	blood
45	chr15:56533400-56536800	Active TSS	NHDF-Ad	bronchial
46	chr15:56533400-56537000	Active TSS	Thymus	Thymus
47	chr15:56533400-56537000	Active TSS	NHLF	lung
48	chr15:56533400-56537200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:56533400-56537200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr15:56533400-56537200	Active TSS	Brain Germinal Matrix	brain

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