Variant report

Variant	rs74017474
Chromosome Location	chr15:56440348-56440349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56439893..56441422-chr15:56532922..56535832,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181827	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs60476946	0.86[AFR][1000 genomes]
rs74017473	0.86[AFR][1000 genomes]
rs74017476	0.86[AFR][1000 genomes]
rs74017484	0.86[AFR][1000 genomes]
rs74017488	0.86[AFR][1000 genomes]
rs74017495	1.00[AFR][1000 genomes]
rs74017496	0.87[AFR][1000 genomes]
rs74017498	0.86[AFR][1000 genomes]
rs74018316	0.86[AFR][1000 genomes]
rs74018608	0.86[AFR][1000 genomes]
rs74018609	0.86[AFR][1000 genomes]
rs74018631	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56388800-56441600	Weak transcription	Lung	lung
2	chr15:56413400-56441600	Weak transcription	Spleen	Spleen
3	chr15:56416200-56441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:56422200-56440400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:56424800-56453800	Weak transcription	Brain Substantia Nigra	brain
6	chr15:56429400-56442600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:56429600-56441200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:56431600-56442800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:56433800-56464000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:56435200-56440600	Weak transcription	Fetal Lung	lung
11	chr15:56435200-56441800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:56435200-56442600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:56435200-56458800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:56435400-56440400	Weak transcription	Primary T cells from cord blood	blood
15	chr15:56435400-56440400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:56435400-56440600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:56435400-56441600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr15:56435400-56441600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:56435400-56441600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:56435400-56441600	Weak transcription	HSMMtube	muscle
21	chr15:56435400-56441600	Weak transcription	NH-A	brain
22	chr15:56435400-56441800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:56435400-56442600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr15:56435400-56443000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr15:56435400-56443400	Weak transcription	Placenta	Placenta
26	chr15:56435400-56444200	Weak transcription	Brain Anterior Caudate	brain
27	chr15:56435400-56444600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:56435400-56444600	Weak transcription	Brain Angular Gyrus	brain
29	chr15:56435400-56446800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr15:56435400-56447200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:56435400-56461000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:56435400-56462400	Weak transcription	Fetal Thymus	thymus
33	chr15:56435400-56465200	Weak transcription	Thymus	Thymus
34	chr15:56435800-56440600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:56435800-56440600	Weak transcription	Brain Germinal Matrix	brain
36	chr15:56435800-56441600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:56435800-56441800	Weak transcription	Fetal Stomach	stomach
38	chr15:56435800-56444200	Weak transcription	Fetal Intestine Large	intestine
39	chr15:56435800-56454000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr15:56436000-56448600	Weak transcription	K562	blood
41	chr15:56436000-56458000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr15:56436400-56441600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr15:56436400-56455800	Weak transcription	Liver	Liver
44	chr15:56436600-56440800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:56436600-56441400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:56436600-56441400	Weak transcription	NHEK	skin
47	chr15:56436600-56442600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:56436600-56443600	Weak transcription	Dnd41	blood
49	chr15:56436600-56458800	Weak transcription	Primary B cells from cord blood	blood
50	chr15:56436800-56440400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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