Variant report
| Variant | rs74018631 |
|---|---|
| Chromosome Location | chr15:56601736-56601737 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TCF12-7 | chr15:56601442-56602860 | ucscGeneNc_uc002afc_2 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs60476946 | 1.00[AFR][1000 genomes] |
| rs74017473 | 1.00[AFR][1000 genomes] |
| rs74017474 | 0.86[AFR][1000 genomes] |
| rs74017476 | 1.00[AFR][1000 genomes] |
| rs74017482 | 0.86[AFR][1000 genomes] |
| rs74017484 | 1.00[AFR][1000 genomes] |
| rs74017488 | 1.00[AFR][1000 genomes] |
| rs74017495 | 0.86[AFR][1000 genomes] |
| rs74017498 | 1.00[AFR][1000 genomes] |
| rs74018316 | 1.00[AFR][1000 genomes] |
| rs74018608 | 1.00[AFR][1000 genomes] |
| rs74018609 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833019 | chr15:56486029-56649933 | Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
