Variant report

Variant	rs74017919
Chromosome Location	chr15:57986969-57986970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57984558..57987320-chr15:57997268..57999048,2	K562	blood:

Variant related genes	Relation type
ENSG00000255529	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1661902	1.00[AMR][1000 genomes]
rs8036404	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57979200-57998200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:57983200-57989400	Weak transcription	Lung	lung
3	chr15:57983400-57989000	Weak transcription	Aorta	Aorta
4	chr15:57983600-57987800	Enhancers	Fetal Heart	heart
5	chr15:57983600-57998200	Weak transcription	Adipose Nuclei	Adipose
6	chr15:57983800-57998400	Weak transcription	Right Ventricle	heart
7	chr15:57984600-57988000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:57984600-57988200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:57985000-57987000	Enhancers	Osteobl	bone
10	chr15:57985000-57987800	Enhancers	NHDF-Ad	bronchial
11	chr15:57985000-57988000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:57986000-57987200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr15:57986000-57987400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:57986000-57987400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:57986200-57987600	Weak transcription	HUVEC	blood vessel
16	chr15:57986200-57987800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:57986200-57994800	Weak transcription	Hela-S3	cervix
18	chr15:57986400-57987000	Enhancers	Colon Smooth Muscle	Colon
19	chr15:57986400-57987400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:57986600-57987000	Weak transcription	Fetal Kidney	kidney
21	chr15:57986600-57987400	Enhancers	Rectal Smooth Muscle	rectum
22	chr15:57986600-57989200	Weak transcription	Left Ventricle	heart
23	chr15:57986800-57987400	Enhancers	Muscle Satellite Cultured Cells	--

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