Variant report

Variant	rs1661902
Chromosome Location	chr15:58118796-58118797
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs34365924	1.00[AMR][1000 genomes]
rs34527708	1.00[AMR][1000 genomes]
rs35514555	1.00[AMR][1000 genomes]
rs74017010	1.00[AMR][1000 genomes]
rs74017023	1.00[AMR][1000 genomes]
rs74017050	1.00[AMR][1000 genomes]
rs74017066	1.00[AMR][1000 genomes]
rs74017074	1.00[AMR][1000 genomes]
rs74017078	1.00[AMR][1000 genomes]
rs74017086	1.00[AMR][1000 genomes]
rs74017089	1.00[AMR][1000 genomes]
rs74017919	1.00[AMR][1000 genomes]
rs8036404	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58112800-58119200	Weak transcription	Right Atrium	heart
2	chr15:58116600-58120800	Enhancers	Fetal Lung	lung
3	chr15:58116800-58118800	Weak transcription	Thymus	Thymus
4	chr15:58117200-58120200	Weak transcription	Fetal Heart	heart
5	chr15:58117400-58118800	Weak transcription	HUVEC	blood vessel
6	chr15:58117800-58119000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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