Variant report

Variant	rs74017023
Chromosome Location	chr15:58167213-58167214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1661902	1.00[AMR][1000 genomes]
rs34365924	1.00[AMR][1000 genomes]
rs34527708	1.00[AMR][1000 genomes]
rs35514555	1.00[AMR][1000 genomes]
rs74017010	1.00[AMR][1000 genomes]
rs74017050	1.00[AMR][1000 genomes]
rs74017066	1.00[AMR][1000 genomes]
rs74017074	1.00[AMR][1000 genomes]
rs74017078	1.00[AMR][1000 genomes]
rs74017086	1.00[AMR][1000 genomes]
rs74017089	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58165000-58167400	Enhancers	NHEK	skin
2	chr15:58165600-58167400	Enhancers	HMEC	breast
3	chr15:58165600-58167400	Enhancers	HUVEC	blood vessel
4	chr15:58165600-58167400	Enhancers	NH-A	brain
5	chr15:58165800-58167400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:58166800-58167400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:58167200-58170200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:58167200-58173000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:58167200-58175800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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