Variant report

Variant	rs74017010
Chromosome Location	chr15:58151681-58151682
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1661902	1.00[AMR][1000 genomes]
rs34365924	1.00[AMR][1000 genomes]
rs34527708	1.00[AMR][1000 genomes]
rs35514555	1.00[AMR][1000 genomes]
rs74017023	1.00[AMR][1000 genomes]
rs74017050	1.00[AMR][1000 genomes]
rs74017066	1.00[AMR][1000 genomes]
rs74017074	1.00[AMR][1000 genomes]
rs74017078	1.00[AMR][1000 genomes]
rs74017086	1.00[AMR][1000 genomes]
rs74017089	1.00[AMR][1000 genomes]
rs8036404	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58148600-58152200	Enhancers	Fetal Thymus	thymus
2	chr15:58148600-58152400	Enhancers	Thymus	Thymus
3	chr15:58150200-58153600	Weak transcription	HSMM	muscle
4	chr15:58151200-58152200	Enhancers	NHEK	skin
5	chr15:58151400-58151800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:58151400-58152000	Enhancers	HMEC	breast
7	chr15:58151400-58152200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:58151600-58151800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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