Variant report

Variant	rs74018297
Chromosome Location	chr16:48188351-48188352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17821664	0.90[AFR][1000 genomes]
rs41280941	0.90[AFR][1000 genomes]
rs58219806	0.95[AFR][1000 genomes]
rs60297142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7187887	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8043902	1.00[AMR][1000 genomes]
rs8058886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48168200-48188800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:48184200-48190000	Weak transcription	Right Atrium	heart
3	chr16:48186600-48190800	Enhancers	Fetal Brain Male	brain
4	chr16:48187600-48189200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr16:48188000-48189000	Weak transcription	Left Ventricle	heart
6	chr16:48188000-48189800	Weak transcription	Fetal Brain Female	brain
7	chr16:48188200-48189800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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