Variant report

Variant	rs58219806
Chromosome Location	chr16:48193732-48193733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16945914	1.00[AMR][1000 genomes]
rs16945928	0.83[AMR][1000 genomes]
rs17821664	0.87[AFR][1000 genomes]
rs41280941	0.87[AFR][1000 genomes]
rs58891706	1.00[AMR][1000 genomes]
rs60297142	0.95[AFR][1000 genomes]
rs7187887	0.93[AFR][1000 genomes]
rs74016303	0.83[AMR][1000 genomes]
rs74016304	0.83[AMR][1000 genomes]
rs74016305	1.00[AMR][1000 genomes]
rs74016315	0.83[AMR][1000 genomes]
rs74016319	0.83[AMR][1000 genomes]
rs74018297	0.95[AFR][1000 genomes]
rs74018302	0.83[AMR][1000 genomes]
rs8053571	0.83[AMR][1000 genomes]
rs8058886	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48190800-48194400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:48191000-48198800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr16:48191000-48199000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr16:48192600-48199000	Weak transcription	NHLF	lung
5	chr16:48192800-48196000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr16:48192800-48198800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:48192800-48198800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr16:48192800-48198800	Weak transcription	HMEC	breast
9	chr16:48192800-48204000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr16:48193200-48196400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr16:48193400-48196000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr16:48193600-48197400	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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