Variant report

Variant	rs16945914
Chromosome Location	chr16:48199333-48199334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:47177796..47178388-chr16:48198169..48199435,3	MCF-7	breast:
2	chr16:47178106..47178802-chr16:48198573..48199362,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171208	Chromatin interaction
ENSG00000260281	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16945928	0.83[AMR][1000 genomes]
rs58219806	1.00[AMR][1000 genomes]
rs58891706	1.00[AMR][1000 genomes]
rs74016303	0.83[AMR][1000 genomes]
rs74016304	0.83[AMR][1000 genomes]
rs74016305	1.00[AMR][1000 genomes]
rs74016315	0.83[AMR][1000 genomes]
rs74016319	0.83[AMR][1000 genomes]
rs74018302	0.83[AMR][1000 genomes]
rs8043902	0.92[YRI][hapmap];0.96[AFR][1000 genomes]
rs8053571	0.83[AMR][1000 genomes]
rs8058886	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48192800-48204000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:48198600-48199400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:48198600-48199600	Enhancers	Fetal Muscle Leg	muscle
4	chr16:48198800-48199400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr16:48198800-48199400	Enhancers	Brain Anterior Caudate	brain
6	chr16:48198800-48199400	Enhancers	Colonic Mucosa	Colon
7	chr16:48198800-48199400	Enhancers	Fetal Muscle Trunk	muscle
8	chr16:48198800-48199600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr16:48198800-48199600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr16:48198800-48199600	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr16:48198800-48199600	Enhancers	Fetal Stomach	stomach
12	chr16:48198800-48199600	Enhancers	Pancreas	Pancrea
13	chr16:48198800-48199600	Enhancers	Stomach Mucosa	stomach
14	chr16:48198800-48199600	Enhancers	GM12878-XiMat	blood
15	chr16:48198800-48199800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr16:48198800-48199800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr16:48198800-48199800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr16:48198800-48199800	Enhancers	HSMM	muscle
19	chr16:48198800-48200200	Enhancers	Placenta	Placenta
20	chr16:48198800-48200200	Enhancers	HMEC	breast
21	chr16:48198800-48200200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr16:48198800-48200400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr16:48198800-48204800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr16:48199000-48199400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr16:48199000-48199400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr16:48199000-48199400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr16:48199000-48199400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr16:48199000-48199400	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr16:48199000-48199400	Flanking Active TSS	Liver	Liver
30	chr16:48199000-48199400	Enhancers	Right Atrium	heart
31	chr16:48199000-48199600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr16:48199000-48199600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr16:48199000-48199600	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr16:48199000-48199600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr16:48199000-48199600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr16:48199000-48199600	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr16:48199000-48199600	Enhancers	Right Ventricle	heart
38	chr16:48199000-48199600	Flanking Bivalent TSS/Enh	HepG2	liver
39	chr16:48199000-48199600	Enhancers	NHLF	lung
40	chr16:48199000-48200600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr16:48199000-48201200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr16:48199200-48199600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr16:48199200-48199600	Enhancers	Primary B cells from cord blood	blood
44	chr16:48199200-48199600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr16:48199200-48199600	Enhancers	Hela-S3	cervix
46	chr16:48199200-48199800	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr16:48199200-48199800	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr16:48199200-48199800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr16:48199200-48199800	Flanking Active TSS	A549	lung
50	chr16:48199200-48199800	Enhancers	Osteobl	bone

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