Variant report

Variant	rs74016319
Chromosome Location	chr16:48238660-48238661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16945914	0.83[AMR][1000 genomes]
rs16945928	1.00[AMR][1000 genomes]
rs58219806	0.83[AMR][1000 genomes]
rs58891706	0.83[AMR][1000 genomes]
rs74016303	1.00[AMR][1000 genomes]
rs74016304	1.00[AMR][1000 genomes]
rs74016305	0.83[AMR][1000 genomes]
rs74016315	1.00[AMR][1000 genomes]
rs74018302	1.00[AMR][1000 genomes]
rs8053571	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48230200-48240400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:48235400-48238800	Enhancers	Liver	Liver
3	chr16:48237000-48239200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr16:48237200-48240400	Weak transcription	Adipose Nuclei	Adipose
5	chr16:48237400-48239600	Enhancers	Fetal Intestine Large	intestine
6	chr16:48237400-48239600	Enhancers	Fetal Intestine Small	intestine
7	chr16:48238000-48239600	Enhancers	Duodenum Mucosa	Duodenum
8	chr16:48238000-48239600	Enhancers	Stomach Mucosa	stomach
9	chr16:48238000-48239600	Flanking Active TSS	HepG2	liver
10	chr16:48238200-48238800	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr16:48238200-48239000	Flanking Active TSS	A549	lung
12	chr16:48238200-48239600	Enhancers	Pancreas	Pancrea
13	chr16:48238400-48239400	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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