Variant report

Variant	rs58891706
Chromosome Location	chr16:48219348-48219349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16945914	1.00[AMR][1000 genomes]
rs16945928	0.83[AMR][1000 genomes]
rs58219806	1.00[AMR][1000 genomes]
rs74016303	0.83[AMR][1000 genomes]
rs74016304	0.83[AMR][1000 genomes]
rs74016305	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016315	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74016319	0.83[AMR][1000 genomes]
rs74018302	0.83[AMR][1000 genomes]
rs8053571	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48199200-48226600	Weak transcription	Spleen	Spleen
2	chr16:48216400-48226400	Weak transcription	Esophagus	oesophagus
3	chr16:48218800-48228000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:48219200-48219600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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