Variant report

Variant	rs74018747
Chromosome Location	chr15:57037652-57037653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs505106	0.83[AFR][1000 genomes]
rs512560	0.83[AFR][1000 genomes]
rs55686396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56957600	1.00[ASN][1000 genomes]
rs74015863	0.83[AFR][1000 genomes]
rs74015898	0.83[AFR][1000 genomes]
rs74015899	0.83[AFR][1000 genomes]
rs74015900	0.83[AFR][1000 genomes]
rs74015946	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57037200-57037800	Enhancers	HSMMtube	muscle
2	chr15:57037200-57038000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:57037200-57038800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:57037400-57037800	Enhancers	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links