Variant report

Variant	rs74015898
Chromosome Location	chr15:57014151-57014152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57010746..57014338-chr15:57023957..57026585,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16977015	0.85[AFR][1000 genomes]
rs505106	1.00[AFR][1000 genomes]
rs512560	1.00[AFR][1000 genomes]
rs530774	0.95[AFR][1000 genomes]
rs531848	0.83[AFR][1000 genomes]
rs554283	0.83[AFR][1000 genomes]
rs55686396	0.83[AFR][1000 genomes]
rs56267680	0.85[AFR][1000 genomes]
rs57365637	0.95[AFR][1000 genomes]
rs60554196	0.90[AFR][1000 genomes]
rs74015863	1.00[AFR][1000 genomes]
rs74015864	0.83[AFR][1000 genomes]
rs74015899	1.00[AFR][1000 genomes]
rs74015900	1.00[AFR][1000 genomes]
rs74015902	0.91[AFR][1000 genomes]
rs74015946	0.81[AFR][1000 genomes]
rs74016566	0.85[AFR][1000 genomes]
rs74016570	0.90[AFR][1000 genomes]
rs74018705	0.83[AFR][1000 genomes]
rs74018747	0.83[AFR][1000 genomes]
rs795030	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56919800-57016600	Weak transcription	Small Intestine	intestine
2	chr15:56958400-57019200	Weak transcription	Fetal Intestine Small	intestine
3	chr15:56971000-57023400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:56992400-57021800	Weak transcription	Right Ventricle	heart
5	chr15:56992600-57022600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:56993000-57016000	Weak transcription	Pancreas	Pancrea
7	chr15:56993000-57024000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:56993400-57021600	Weak transcription	Fetal Brain Male	brain
9	chr15:56994000-57023800	Weak transcription	Fetal Kidney	kidney
10	chr15:56995800-57016000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:56995800-57022200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:56996000-57021800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr15:56996400-57015800	Weak transcription	Fetal Intestine Large	intestine
14	chr15:56996400-57021600	Weak transcription	HSMMtube	muscle
15	chr15:56996400-57022600	Weak transcription	NH-A	brain
16	chr15:56996800-57022600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:56997000-57016000	Weak transcription	HSMM	muscle
18	chr15:56997200-57015800	Weak transcription	Liver	Liver
19	chr15:56997200-57016400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:56997200-57016600	Weak transcription	Left Ventricle	heart
21	chr15:56997200-57022800	Weak transcription	Gastric	stomach
22	chr15:56997200-57023800	Weak transcription	Fetal Stomach	stomach
23	chr15:56998000-57016000	Weak transcription	Fetal Lung	lung
24	chr15:56998400-57016200	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr15:56998400-57021200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:56998600-57015800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:56998800-57021800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:56998800-57023400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr15:56998800-57023800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr15:56999200-57017800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:56999400-57023400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:57008000-57017200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr15:57009200-57015800	Weak transcription	Stomach Mucosa	stomach
34	chr15:57009200-57021400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:57009400-57015800	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:57009400-57016000	Weak transcription	Brain Angular Gyrus	brain
37	chr15:57009400-57022800	Weak transcription	Right Atrium	heart
38	chr15:57009400-57024400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr15:57010800-57016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr15:57011000-57022200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:57011200-57016400	Weak transcription	Brain Anterior Caudate	brain
42	chr15:57011200-57022600	Weak transcription	Fetal Heart	heart
43	chr15:57011400-57014400	Genic enhancers	Fetal Thymus	thymus
44	chr15:57011400-57015600	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr15:57011400-57021200	Weak transcription	Brain Substantia Nigra	brain
46	chr15:57011400-57021400	Weak transcription	Adipose Nuclei	Adipose
47	chr15:57011400-57021800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:57011600-57016000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:57011600-57016600	Weak transcription	Brain Hippocampus Middle	brain
50	chr15:57011600-57018400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links