Variant report

Variant	rs16977015
Chromosome Location	chr15:56912898-56912899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs505106	0.85[AFR][1000 genomes]
rs512560	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs530774	1.00[ASW][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];0.80[AFR][1000 genomes]
rs531848	1.00[YRI][hapmap]
rs554283	1.00[YRI][hapmap]
rs56267680	1.00[AFR][1000 genomes]
rs57365637	0.81[AFR][1000 genomes]
rs60554196	0.95[AFR][1000 genomes]
rs74015863	0.85[AFR][1000 genomes]
rs74015898	0.85[AFR][1000 genomes]
rs74015899	0.85[AFR][1000 genomes]
rs74015900	0.85[AFR][1000 genomes]
rs74016566	1.00[AFR][1000 genomes]
rs74016570	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1041239	chr15:56888945-56959028	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56902800-56945400	Weak transcription	Right Ventricle	heart
2	chr15:56905600-56923600	Weak transcription	Left Ventricle	heart
3	chr15:56908800-56923400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:56910600-56945400	Weak transcription	HSMMtube	muscle
5	chr15:56911600-56913400	Enhancers	Dnd41	blood
6	chr15:56912400-56913200	Weak transcription	Fetal Thymus	thymus
7	chr15:56912400-56913600	Weak transcription	Thymus	Thymus
8	chr15:56912400-56914800	Weak transcription	Primary T cells from cord blood	blood
9	chr15:56912800-56921000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:56912800-56923400	Weak transcription	Adipose Nuclei	Adipose
11	chr15:56912800-56923400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr15:56912800-56957000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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