Variant report

Variant	rs531848
Chromosome Location	chr15:56996704-56996705
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56986912..56991518-chr15:56996141..56999393,4	K562	blood:
2	chr15:56986912..56989888-chr15:56996141..56997779,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs505106	0.83[AFR][1000 genomes]
rs512560	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs554283	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs74015863	0.83[AFR][1000 genomes]
rs74015864	1.00[AFR][1000 genomes]
rs74015898	0.83[AFR][1000 genomes]
rs74015899	0.83[AFR][1000 genomes]
rs74015900	0.83[AFR][1000 genomes]
rs74015902	0.83[AFR][1000 genomes]
rs74018073	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56919800-57016600	Weak transcription	Small Intestine	intestine
2	chr15:56928400-56996800	Weak transcription	Gastric	stomach
3	chr15:56937400-57000200	Weak transcription	Colonic Mucosa	Colon
4	chr15:56958400-57019200	Weak transcription	Fetal Intestine Small	intestine
5	chr15:56971000-57023400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:56984000-56998800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:56987200-56999600	Strong transcription	Fetal Thymus	thymus
8	chr15:56988600-56997200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:56988800-56997200	Strong transcription	Liver	Liver
10	chr15:56988800-57008400	Weak transcription	Fetal Heart	heart
11	chr15:56989800-56998400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr15:56990000-56998400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr15:56990000-56999000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:56990000-56999200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:56990200-56996800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:56990200-56997200	Strong transcription	Primary B cells from cord blood	blood
17	chr15:56990200-56997200	Strong transcription	Osteobl	bone
18	chr15:56990200-56998400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:56990200-56999400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr15:56990200-56999400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:56990400-56997000	Strong transcription	HSMM	muscle
22	chr15:56990400-56998800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr15:56990400-56999000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:56990600-56997200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:56990600-56997400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:56990600-56998400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:56990600-56998600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:56991200-56997000	Weak transcription	Hela-S3	cervix
29	chr15:56991200-56997600	Weak transcription	Lung	lung
30	chr15:56991200-56999600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:56991200-57001200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr15:56991400-56997600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr15:56992400-57008400	Weak transcription	K562	blood
34	chr15:56992400-57010800	Weak transcription	Spleen	Spleen
35	chr15:56992400-57021800	Weak transcription	Right Ventricle	heart
36	chr15:56992600-56998600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:56992600-57022600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:56993000-57016000	Weak transcription	Pancreas	Pancrea
39	chr15:56993000-57024000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:56993200-56997400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:56993200-56998200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr15:56993200-56998600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr15:56993200-56999200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr15:56993200-56999400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:56993200-57000200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:56993200-57001200	Weak transcription	Stomach Mucosa	stomach
47	chr15:56993200-57001600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr15:56993200-57002400	Weak transcription	NHEK	skin
49	chr15:56993200-57007200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr15:56993200-57008200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links