Variant report

Variant	rs74015902
Chromosome Location	chr15:57024787-57024788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:56989844..56991696-chr15:57023629..57025525,2	MCF-7	breast:
2	chr15:57024542..57026335-chr15:57210196..57212175,2	K562	blood:
3	chr15:57023926..57025513-chr15:57178934..57180893,2	K562	blood:
4	chr15:57022824..57025649-chr15:57612283..57614634,3	K562	blood:
5	chr15:57023111..57027218-chr15:57209095..57213054,4	K562	blood:
6	chr15:57022824..57027100-chr15:57611258..57614634,3	K562	blood:
7	chr15:56999062..57001613-chr15:57024278..57025915,2	MCF-7	breast:
8	chr15:56997588..57000196-chr15:57024112..57025817,2	K562	blood:
9	chr1:149223243..149225441-chr15:57024407..57026352,2	MCF-7	breast:
10	chr15:56997588..56999927-chr15:57024317..57027282,2	K562	blood:
11	chr15:57023339..57026885-chr15:57210242..57212303,3	MCF-7	breast:
12	chr15:57006002..57008817-chr15:57023119..57025487,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140262	Chromatin interaction
ENSG00000137871	Chromatin interaction
ENSG00000260172	Chromatin interaction
ENSG00000206737	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs505106	0.91[AFR][1000 genomes]
rs512560	0.91[AFR][1000 genomes]
rs530774	0.86[AFR][1000 genomes]
rs531848	0.83[AFR][1000 genomes]
rs554283	0.83[AFR][1000 genomes]
rs57365637	0.86[AFR][1000 genomes]
rs60554196	0.81[AFR][1000 genomes]
rs73425629	1.00[AMR][1000 genomes]
rs74015863	0.91[AFR][1000 genomes]
rs74015864	0.83[AFR][1000 genomes]
rs74015898	0.91[AFR][1000 genomes]
rs74015899	0.91[AFR][1000 genomes]
rs74015900	0.91[AFR][1000 genomes]
rs74016570	0.81[AFR][1000 genomes]
rs795030	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57012400-57025000	Weak transcription	Spleen	Spleen
2	chr15:57022800-57024800	Enhancers	Small Intestine	intestine
3	chr15:57023000-57024800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr15:57023400-57025200	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr15:57023600-57024800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:57023600-57024800	Flanking Active TSS	Fetal Brain Female	brain
7	chr15:57023600-57025000	Weak transcription	Gastric	stomach
8	chr15:57023600-57025800	Active TSS	Thymus	Thymus
9	chr15:57023800-57024800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:57023800-57024800	Flanking Active TSS	Brain Cingulate Gyrus	brain
11	chr15:57023800-57024800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:57023800-57024800	Flanking Active TSS	Colon Smooth Muscle	Colon
13	chr15:57023800-57024800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
14	chr15:57023800-57024800	Flanking Active TSS	Rectal Smooth Muscle	rectum
15	chr15:57023800-57024800	Flanking Active TSS	GM12878-XiMat	blood
16	chr15:57023800-57025000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:57023800-57025000	Flanking Active TSS	Fetal Brain Male	brain
18	chr15:57023800-57025200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:57023800-57025200	Flanking Active TSS	Osteobl	bone
20	chr15:57023800-57025400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr15:57023800-57025400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:57023800-57025400	Flanking Active TSS	HUVEC	blood vessel
23	chr15:57024000-57024800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr15:57024000-57024800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr15:57024000-57024800	Flanking Active TSS	Liver	Liver
26	chr15:57024000-57024800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr15:57024000-57024800	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr15:57024000-57024800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
29	chr15:57024000-57024800	Flanking Active TSS	Fetal Intestine Small	intestine
30	chr15:57024000-57024800	Flanking Active TSS	HSMM	muscle
31	chr15:57024000-57024800	Flanking Active TSS	NH-A	brain
32	chr15:57024000-57025000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr15:57024000-57025000	Flanking Active TSS	Dnd41	blood
34	chr15:57024000-57025000	Flanking Active TSS	Hela-S3	cervix
35	chr15:57024000-57025000	Flanking Active TSS	NHEK	skin
36	chr15:57024000-57025200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr15:57024000-57025400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr15:57024000-57025400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:57024000-57025400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:57024000-57025800	Active TSS	Right Ventricle	heart
41	chr15:57024200-57024800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr15:57024200-57024800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr15:57024200-57024800	Flanking Active TSS	Brain Angular Gyrus	brain
44	chr15:57024200-57024800	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr15:57024200-57024800	Flanking Active TSS	Fetal Heart	heart
46	chr15:57024200-57024800	Flanking Active TSS	Fetal Kidney	kidney
47	chr15:57024200-57024800	Flanking Active TSS	Fetal Lung	lung
48	chr15:57024200-57024800	Flanking Active TSS	Fetal Stomach	stomach
49	chr15:57024200-57024800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
50	chr15:57024200-57024800	Flanking Active TSS	Stomach Smooth Muscle	stomach

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