Variant report

Variant	rs74018854
Chromosome Location	chr15:58840297-58840298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:58730575..58732285-chr15:58839559..58842370,2	K562	blood:
2	chr15:58824835..58829265-chr15:58838025..58840916,4	K562	blood:
3	chr15:58839847..58842164-chr15:59040340..59041855,2	MCF-7	breast:
4	chr15:58824835..58829265-chr15:58838025..58840916,5	K562	blood:
5	chr15:58838998..58841145-chr15:58842509..58846691,3	MCF-7	breast:
6	chr15:58813058..58816667-chr15:58837255..58840517,3	MCF-7	breast:
7	chr15:58836656..58842196-chr15:58843431..58849915,8	K562	blood:
8	chr15:58810857..58816650-chr15:58835363..58842392,10	K562	blood:
9	chr15:58831032..58833136-chr15:58839307..58841040,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259476	Chromatin interaction
ENSG00000137845	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs41294815	1.00[AMR][1000 genomes]
rs57437914	1.00[AMR][1000 genomes]
rs74016904	1.00[AMR][1000 genomes]
rs74018855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58827600-58843400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:58829000-58847600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:58835600-58843200	Weak transcription	Thymus	Thymus
4	chr15:58837000-58840600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:58837000-58848400	Enhancers	Fetal Thymus	thymus
6	chr15:58837400-58840400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:58837400-58843000	Enhancers	Fetal Heart	heart
8	chr15:58837600-58840600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:58837800-58840800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:58838000-58840600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:58838000-58845000	Enhancers	Placenta	Placenta
12	chr15:58838200-58841200	Weak transcription	Fetal Brain Male	brain
13	chr15:58838200-58841600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:58838200-58845600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:58838400-58840600	Enhancers	HUVEC	blood vessel
16	chr15:58838400-58840600	Enhancers	Osteobl	bone
17	chr15:58838400-58843000	Enhancers	Left Ventricle	heart
18	chr15:58838400-58843400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr15:58838400-58843800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr15:58838600-58840400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:58838600-58840600	Enhancers	NHDF-Ad	bronchial
22	chr15:58838600-58842000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:58838600-58842600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:58838600-58842600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr15:58838600-58842800	Weak transcription	Dnd41	blood
26	chr15:58838600-58843400	Weak transcription	Primary T cells from cord blood	blood
27	chr15:58838800-58840400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:58838800-58840400	Enhancers	NHEK	skin
29	chr15:58838800-58842200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:58838800-58842200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:58838800-58842800	Enhancers	Fetal Muscle Leg	muscle
32	chr15:58838800-58843000	Enhancers	Fetal Stomach	stomach
33	chr15:58838800-58843400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:58838800-58844000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:58838800-58845000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr15:58839000-58840800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:58839000-58841000	Enhancers	Right Ventricle	heart
38	chr15:58839000-58842400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr15:58839000-58843400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr15:58839000-58843400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr15:58839200-58840400	Enhancers	Colon Smooth Muscle	Colon
42	chr15:58839200-58840400	Enhancers	Fetal Muscle Trunk	muscle
43	chr15:58839200-58840400	Flanking Active TSS	NH-A	brain
44	chr15:58839200-58840600	Enhancers	HMEC	breast
45	chr15:58839200-58840800	Enhancers	Aorta	Aorta
46	chr15:58839200-58845200	Enhancers	Placenta Amnion	Placenta Amnion
47	chr15:58839600-58840400	Weak transcription	Pancreas	Pancrea
48	chr15:58839600-58841400	Enhancers	Muscle Satellite Cultured Cells	--
49	chr15:58839600-58841600	Enhancers	K562	blood
50	chr15:58839600-58843400	Weak transcription	Lung	lung

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