Variant report

Variant	rs74024635
Chromosome Location	chr15:77198449-77198450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:77196768-77198565	HepG2	liver:	n/a	chr15:77197746-77197759 chr15:77197748-77197757 chr15:77197746-77197759 chr15:77197747-77197758 chr15:77197748-77197757 chr15:77197748-77197758
2	E2F6	chr15:77196752-77198600	H1-hESC	embryonic stem cell:	n/a	chr15:77196974-77196985 chr15:77197806-77197815 chr15:77198348-77198360 chr15:77197533-77197542 chr15:77196974-77196985 chr15:77197762-77197777 chr15:77196974-77196981 chr15:77197842-77197853
3	E2F6	chr15:77197385-77198530	H1-hESC	embryonic stem cell:	n/a	chr15:77197806-77197815 chr15:77198348-77198360 chr15:77197533-77197542 chr15:77197762-77197777 chr15:77197842-77197853
4	REST	chr15:77196688-77198525	H1-neurons	neurons:	n/a	chr15:77197774-77197784
5	MAX	chr15:77196697-77198475	A549	lung:	n/a	chr15:77197746-77197759 chr15:77197748-77197757 chr15:77197746-77197759 chr15:77197747-77197758 chr15:77197748-77197757 chr15:77197748-77197758
6	EP300	chr15:77198328-77198562	K562	blood:	n/a	n/a
7	SIN3AK20	chr15:77196691-77198477	MCF-7	breast:	n/a	n/a
8	MAX	chr15:77196656-77198567	A549	lung:	n/a	chr15:77197746-77197759 chr15:77197748-77197757 chr15:77197746-77197759 chr15:77197747-77197758 chr15:77197748-77197757 chr15:77197748-77197758
9	E2F6	chr15:77198237-77198468	K562	blood:	n/a	chr15:77198348-77198360
10	MXI1	chr15:77195653-77199102	SK-N-SH	brain:	n/a	chr15:77197749-77197758
11	MAX	chr15:77196770-77198525	H1-hESC	embryonic stem cell:	n/a	chr15:77197746-77197759 chr15:77197748-77197757 chr15:77197746-77197759 chr15:77197747-77197758 chr15:77197748-77197757 chr15:77197748-77197758
12	E2F6	chr15:77196732-77198661	A549	lung:	n/a	chr15:77196974-77196985 chr15:77197806-77197815 chr15:77198348-77198360 chr15:77197533-77197542 chr15:77196974-77196985 chr15:77197762-77197777 chr15:77196974-77196981 chr15:77197842-77197853
13	MAX	chr15:77196750-77198511	K562	blood:	n/a	chr15:77197746-77197759 chr15:77197748-77197757 chr15:77197746-77197759 chr15:77197747-77197758 chr15:77197748-77197757 chr15:77197748-77197758
14	MAX	chr15:77196779-77198643	HepG2	liver:	n/a	chr15:77197746-77197759 chr15:77197748-77197757 chr15:77197746-77197759 chr15:77197747-77197758 chr15:77197748-77197757 chr15:77197748-77197758
15	KAP1	chr15:77197734-77198513	U2OS	brain:	n/a	n/a
16	MAX	chr15:77197464-77198496	GM12878	blood:	n/a	chr15:77197746-77197759 chr15:77197748-77197757 chr15:77197746-77197759 chr15:77197747-77197758 chr15:77197748-77197757 chr15:77197748-77197758
17	MXI1	chr15:77196705-77198527	IMR90	lung:	n/a	chr15:77197749-77197758
18	PML	chr15:77197212-77198521	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:77196909..77199186-chr15:77360659..77363469,2	K562	blood:
2	chr15:77196194..77198493-chr15:77235491..77237833,2	K562	blood:
3	chr15:77196272..77198559-chr15:77223364..77225357,2	K562	blood:
4	chr15:77194744..77199863-chr15:77220881..77225601,7	MCF-7	breast:

Variant related genes	Relation type
SCAPER	TF binding region
ENSG00000269951	Chromatin interaction
ENSG00000140391	Chromatin interaction
ENSG00000117906	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28635620	1.00[AMR][1000 genomes]
rs74024626	1.00[AMR][1000 genomes]
rs74024636	1.00[AMR][1000 genomes]
rs74024652	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv1803942	chr15:77151005-77210457	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77195400-77198600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:77196800-77198600	Active TSS	Aorta	Aorta
3	chr15:77196800-77198800	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr15:77197800-77198600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:77197800-77198600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:77197800-77198600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:77197800-77198600	Flanking Active TSS	Liver	Liver
8	chr15:77197800-77198600	Enhancers	Small Intestine	intestine
9	chr15:77197800-77198600	Flanking Active TSS	HepG2	liver
10	chr15:77197800-77198800	Flanking Active TSS	Fetal Brain Male	brain
11	chr15:77198000-77198600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:77198000-77198600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:77198000-77198600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr15:77198000-77198600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr15:77198000-77198600	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr15:77198000-77198600	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr15:77198000-77198600	Flanking Active TSS	Brain Cingulate Gyrus	brain
18	chr15:77198000-77198600	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr15:77198000-77198600	Flanking Active TSS	Colon Smooth Muscle	Colon
20	chr15:77198000-77198600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr15:77198000-77198800	Flanking Active TSS	Rectal Smooth Muscle	rectum
22	chr15:77198000-77198800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr15:77198000-77198800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr15:77198000-77198800	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr15:77198000-77199200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:77198200-77198600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:77198200-77198600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
28	chr15:77198200-77198600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
29	chr15:77198200-77198600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
30	chr15:77198200-77198600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:77198200-77198600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:77198200-77198600	Flanking Active TSS	Brain Substantia Nigra	brain
33	chr15:77198200-77198600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr15:77198200-77198600	Flanking Active TSS	Fetal Brain Female	brain
35	chr15:77198200-77198600	Enhancers	Fetal Thymus	thymus
36	chr15:77198200-77198600	Enhancers	HUVEC	blood vessel
37	chr15:77198200-77198600	Enhancers	NH-A	brain
38	chr15:77198200-77198800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:77198200-77198800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
40	chr15:77198200-77198800	Enhancers	Fetal Intestine Large	intestine
41	chr15:77198200-77198800	Enhancers	Fetal Intestine Small	intestine
42	chr15:77198200-77198800	Enhancers	Placenta	Placenta
43	chr15:77198200-77198800	Enhancers	Right Ventricle	heart
44	chr15:77198200-77198800	Enhancers	Stomach Mucosa	stomach
45	chr15:77198200-77198800	Enhancers	NHLF	lung
46	chr15:77198200-77199000	Enhancers	Primary B cells from peripheral blood	blood
47	chr15:77198200-77199000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr15:77198200-77199000	Enhancers	Placenta Amnion	Placenta Amnion
49	chr15:77198400-77198600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
50	chr15:77198400-77198600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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