Variant report

Variant	rs74024652
Chromosome Location	chr15:77280265-77280266
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28635620	1.00[AMR][1000 genomes]
rs74024626	1.00[AMR][1000 genomes]
rs74024635	1.00[AMR][1000 genomes]
rs74024636	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1808532	chr15:77257714-77332539	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1043017	chr15:77266776-77309938	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1035874	chr15:77266776-77328742	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77266600-77280800	Weak transcription	Right Ventricle	heart
2	chr15:77272000-77280800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:77272400-77280800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:77274000-77287200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:77275200-77280600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:77276200-77280400	Weak transcription	Adipose Nuclei	Adipose
7	chr15:77276200-77280400	Weak transcription	Spleen	Spleen
8	chr15:77276200-77280800	Weak transcription	Brain Anterior Caudate	brain
9	chr15:77276200-77281600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:77276600-77281200	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:77276800-77280600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr15:77276800-77280800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:77277000-77280400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:77278400-77280400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:77278600-77282000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:77279000-77281600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:77279000-77281600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:77279000-77281800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr15:77279000-77281800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr15:77279000-77282000	Enhancers	Primary T cells fromperipheralblood	blood
21	chr15:77279200-77281600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr15:77279200-77281600	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr15:77279200-77281800	Enhancers	Primary B cells from cord blood	blood
24	chr15:77279200-77282000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:77279400-77280400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr15:77279400-77280800	Weak transcription	Primary T cells from cord blood	blood
27	chr15:77279400-77280800	Weak transcription	Colonic Mucosa	Colon
28	chr15:77279600-77280800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:77280000-77280400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr15:77280000-77281400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr15:77280000-77281600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:77280000-77281800	Enhancers	Primary B cells from peripheral blood	blood
33	chr15:77280000-77281800	Enhancers	Fetal Thymus	thymus
34	chr15:77280000-77281800	Enhancers	Left Ventricle	heart
35	chr15:77280000-77281800	Flanking Active TSS	GM12878-XiMat	blood
36	chr15:77280000-77282000	Enhancers	Fetal Muscle Leg	muscle
37	chr15:77280200-77280800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr15:77280200-77281600	Enhancers	Primary hematopoietic stem cells	blood
39	chr15:77280200-77281600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:77280200-77282000	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr15:77280200-77282000	Enhancers	Placenta	Placenta
42	chr15:77280200-77282000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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