Variant report

Variant	rs74024776
Chromosome Location	chr16:75421690-75421691
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:75281610..75284500-chr16:75420263..75423212,2	MCF-7	breast:
2	chr16:75290897..75293709-chr16:75420736..75422960,2	K562	blood:

Variant related genes	Relation type
ENSG00000050820	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16960300	1.00[AMR][1000 genomes]
rs16960531	1.00[AMR][1000 genomes]
rs16960716	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962103	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3889404	1.00[AMR][1000 genomes]
rs55693034	1.00[AMR][1000 genomes]
rs56120923	1.00[AMR][1000 genomes]
rs56769615	1.00[AMR][1000 genomes]
rs59044615	1.00[AMR][1000 genomes]
rs61736963	1.00[AMR][1000 genomes]
rs74024762	1.00[AMR][1000 genomes]
rs74024763	1.00[AMR][1000 genomes]
rs74024767	1.00[AMR][1000 genomes]
rs74024778	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024781	1.00[AMR][1000 genomes]
rs74024788	1.00[AMR][1000 genomes]
rs74024790	1.00[AMR][1000 genomes]
rs74024791	1.00[AMR][1000 genomes]
rs74024792	1.00[AMR][1000 genomes]
rs74024793	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv1065995	chr16:75373756-75626027	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	esv2422358	chr16:75381762-75456763	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1063718	chr16:75395969-75608071	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
6	nsv525232	chr16:75402361-75439132	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv525466	chr16:75402361-75439132	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv2758432	chr16:75419614-75576971	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
9	esv2758657	chr16:75419614-75576971	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75338800-75426400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr16:75376600-75426800	Weak transcription	Brain Germinal Matrix	brain
3	chr16:75377000-75424400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr16:75377000-75426400	Weak transcription	Gastric	stomach
5	chr16:75377200-75424000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr16:75377400-75426400	Weak transcription	Pancreas	Pancrea
7	chr16:75392400-75422000	Weak transcription	Aorta	Aorta
8	chr16:75399600-75426800	Weak transcription	Esophagus	oesophagus
9	chr16:75403600-75426800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr16:75404000-75422600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr16:75406000-75453400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr16:75406600-75422800	Weak transcription	Colon Smooth Muscle	Colon
13	chr16:75406600-75426400	Weak transcription	Psoas Muscle	Psoas
14	chr16:75407200-75454200	Weak transcription	Stomach Mucosa	stomach
15	chr16:75408400-75424600	Weak transcription	Fetal Brain Female	brain
16	chr16:75409200-75445400	Weak transcription	Colonic Mucosa	Colon
17	chr16:75411800-75422400	Weak transcription	Fetal Brain Male	brain
18	chr16:75412000-75425600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr16:75412000-75426000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr16:75412000-75426600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr16:75412000-75426800	Weak transcription	Spleen	Spleen
22	chr16:75412200-75422400	Weak transcription	Right Atrium	heart
23	chr16:75412200-75422800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr16:75412200-75424000	Weak transcription	Fetal Stomach	stomach
25	chr16:75412200-75424000	Weak transcription	Ovary	ovary
26	chr16:75412200-75424600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr16:75412200-75426400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr16:75412200-75426600	Weak transcription	Brain Angular Gyrus	brain
29	chr16:75412200-75426600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr16:75412200-75428000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr16:75412400-75424000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr16:75412400-75425200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr16:75412400-75426600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr16:75412600-75422000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr16:75412600-75423200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr16:75412600-75424600	Weak transcription	Placenta	Placenta
37	chr16:75412600-75426000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr16:75412600-75426800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr16:75412600-75446000	Weak transcription	Brain Substantia Nigra	brain
40	chr16:75412800-75422800	Weak transcription	Brain Hippocampus Middle	brain
41	chr16:75412800-75423800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr16:75412800-75424400	Weak transcription	Brain Anterior Caudate	brain
43	chr16:75412800-75424600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr16:75413600-75423400	Weak transcription	Liver	Liver
45	chr16:75414600-75424000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr16:75414800-75423800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr16:75415000-75422200	Weak transcription	Fetal Lung	lung
48	chr16:75415200-75423800	Weak transcription	NH-A	brain
49	chr16:75415200-75426400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr16:75415400-75426000	Weak transcription	Thymus	Thymus

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