Variant report

Variant	rs74024781
Chromosome Location	chr16:75455000-75455001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75454256..75455158-chr4:2470295..2471217,2	Hela-S3	cervix:
2	chr16:75448191..75450141-chr16:75454972..75456731,2	MCF-7	breast:
3	chr16:75452723..75458057-chr16:75465573..75470138,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000063978	Chromatin interaction
ENSG00000153774	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16960300	1.00[AMR][1000 genomes]
rs16960531	1.00[AMR][1000 genomes]
rs16960716	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961751	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962103	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3889404	1.00[AMR][1000 genomes]
rs55693034	1.00[AMR][1000 genomes]
rs56120923	1.00[AMR][1000 genomes]
rs56769615	1.00[AMR][1000 genomes]
rs59044615	1.00[AMR][1000 genomes]
rs74024762	1.00[AMR][1000 genomes]
rs74024763	1.00[AMR][1000 genomes]
rs74024767	1.00[AMR][1000 genomes]
rs74024776	1.00[AMR][1000 genomes]
rs74024778	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024788	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024790	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024791	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024792	1.00[AMR][1000 genomes]
rs74024793	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv1065995	chr16:75373756-75626027	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	esv2422358	chr16:75381762-75456763	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1063718	chr16:75395969-75608071	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
6	esv2758432	chr16:75419614-75576971	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	esv2758657	chr16:75419614-75576971	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv1062023	chr16:75427013-75461626	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:141 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75425400-75457200	Weak transcription	Fetal Brain Male	brain
2	chr16:75427200-75464400	Weak transcription	Esophagus	oesophagus
3	chr16:75427200-75465400	Weak transcription	Spleen	Spleen
4	chr16:75429200-75455000	Weak transcription	Gastric	stomach
5	chr16:75432400-75465400	Weak transcription	Pancreas	Pancrea
6	chr16:75432400-75466600	Weak transcription	Aorta	Aorta
7	chr16:75443800-75455000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr16:75444000-75464400	Weak transcription	Hela-S3	cervix
9	chr16:75445200-75465000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr16:75446200-75465200	Weak transcription	Lung	lung
11	chr16:75446600-75455000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr16:75446600-75458000	Weak transcription	HSMMtube	muscle
13	chr16:75446600-75464600	Weak transcription	Brain Germinal Matrix	brain
14	chr16:75446600-75465400	Weak transcription	Small Intestine	intestine
15	chr16:75446600-75466400	Weak transcription	Brain Angular Gyrus	brain
16	chr16:75446600-75466400	Weak transcription	Right Ventricle	heart
17	chr16:75446800-75455000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr16:75446800-75455000	Weak transcription	Fetal Kidney	kidney
19	chr16:75446800-75455600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr16:75446800-75466000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr16:75446800-75466400	Weak transcription	Fetal Brain Female	brain
22	chr16:75446800-75466400	Weak transcription	HSMM	muscle
23	chr16:75447000-75466400	Weak transcription	Liver	Liver
24	chr16:75448600-75455000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr16:75449600-75455400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr16:75450000-75455000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr16:75450000-75455000	Weak transcription	NHLF	lung
28	chr16:75450000-75455400	Weak transcription	Brain Hippocampus Middle	brain
29	chr16:75450200-75455000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr16:75450200-75455000	Weak transcription	Fetal Stomach	stomach
31	chr16:75450200-75455400	Weak transcription	Brain Substantia Nigra	brain
32	chr16:75450800-75465000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr16:75452400-75457000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr16:75453200-75455800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr16:75453400-75455200	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr16:75453600-75466400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr16:75453800-75455000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr16:75453800-75466400	Weak transcription	Psoas Muscle	Psoas
39	chr16:75453800-75466600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr16:75454000-75455200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr16:75454000-75455200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr16:75454000-75455800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr16:75454000-75455800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr16:75454200-75455000	Enhancers	HepG2	liver
45	chr16:75454200-75455800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr16:75454200-75455800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr16:75454200-75455800	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr16:75454200-75455800	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr16:75454200-75455800	Enhancers	Fetal Intestine Large	intestine
50	chr16:75454200-75455800	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links