Variant report

Variant	rs74025105
Chromosome Location	chr15:77572357-77572358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77571666..77575195-chr15:77579317..77581859,3	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1015813	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10519158	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11853625	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11853633	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11853696	0.81[ASN][1000 genomes]
rs11854182	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11854466	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856513	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11857330	0.93[ASN][1000 genomes]
rs11857804	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12148274	0.82[ASN][1000 genomes]
rs12324366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12912963	0.82[ASN][1000 genomes]
rs13379686	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13380152	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13380202	0.85[ASN][1000 genomes]
rs1374201	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1446313	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16968730	0.82[ASN][1000 genomes]
rs17381821	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17383078	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17384809	0.85[ASN][1000 genomes]
rs17385059	0.85[ASN][1000 genomes]
rs17385296	0.85[ASN][1000 genomes]
rs17385352	0.85[ASN][1000 genomes]
rs17468413	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17470529	0.83[ASN][1000 genomes]
rs17470952	0.81[ASN][1000 genomes]
rs1867780	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2137977	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2292594	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28437977	0.83[ASN][1000 genomes]
rs2864079	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2864840	0.80[ASN][1000 genomes]
rs3784787	0.83[ASN][1000 genomes]
rs4592615	0.93[ASN][1000 genomes]
rs4638539	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4886852	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4886857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886864	0.83[ASN][1000 genomes]
rs4886865	0.83[ASN][1000 genomes]
rs55881066	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55994208	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56070388	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58792939	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59831220	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60079927	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60761381	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60863150	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7163620	0.93[ASN][1000 genomes]
rs7173670	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7182221	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74025074	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74025104	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74026913	0.80[ASN][1000 genomes]
rs74027548	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74027549	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7496431	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8035526	0.83[ASN][1000 genomes]
rs9806326	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1041064	chr15:77497903-77631698	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1051744	chr15:77511489-77679160	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1044270	chr15:77534919-77611256	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv542445	chr15:77534919-77611256	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv1830237	chr15:77535785-77694607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv869991	chr15:77545316-77578885	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv33934	chr15:77548764-77579524	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv974605	chr15:77570795-77573730	Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77520200-77578800	Weak transcription	Small Intestine	intestine
2	chr15:77527000-77576200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr15:77528800-77574400	Weak transcription	HepG2	liver
4	chr15:77528800-77577200	Weak transcription	Spleen	Spleen
5	chr15:77528800-77579200	Weak transcription	Brain Angular Gyrus	brain
6	chr15:77529400-77574400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:77541800-77589800	Weak transcription	Fetal Intestine Small	intestine
8	chr15:77542000-77575200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:77542000-77575200	Weak transcription	HUVEC	blood vessel
10	chr15:77542200-77580000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:77544400-77581000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:77544600-77589200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr15:77545200-77576200	Weak transcription	HSMM	muscle
14	chr15:77552600-77574200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:77553400-77573200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:77559400-77578800	Weak transcription	Ovary	ovary
17	chr15:77559600-77574400	Weak transcription	NHLF	lung
18	chr15:77559600-77576200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:77559600-77578800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:77559800-77579400	Weak transcription	Brain Anterior Caudate	brain
21	chr15:77559800-77585200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:77560000-77572400	Weak transcription	Lung	lung
23	chr15:77560000-77574000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:77560000-77575000	Weak transcription	Adipose Nuclei	Adipose
25	chr15:77560000-77576600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr15:77562000-77580200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:77562200-77576000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:77562200-77589600	Weak transcription	Primary T cells from cord blood	blood
29	chr15:77563400-77577400	Weak transcription	Fetal Kidney	kidney
30	chr15:77565200-77576400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:77565400-77578800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:77565600-77573600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:77566000-77576400	Weak transcription	Fetal Intestine Large	intestine
34	chr15:77567000-77573200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:77567600-77580200	Weak transcription	Fetal Lung	lung
36	chr15:77568400-77575200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:77568400-77578600	Weak transcription	Esophagus	oesophagus
38	chr15:77568800-77573200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:77568800-77574400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:77568800-77578000	Weak transcription	Thymus	Thymus
41	chr15:77569000-77574200	Weak transcription	NHDF-Ad	bronchial
42	chr15:77569600-77573600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:77570000-77573600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:77570000-77579400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:77570200-77573400	Strong transcription	Osteobl	bone
46	chr15:77570400-77576400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr15:77570600-77573000	Weak transcription	Dnd41	blood
48	chr15:77570800-77573600	Enhancers	Primary B cells from peripheral blood	blood
49	chr15:77570800-77573600	Strong transcription	Fetal Stomach	stomach
50	chr15:77571200-77572600	Strong transcription	Fetal Muscle Leg	muscle

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