Variant report

Variant	rs8035526
Chromosome Location	chr15:77683247-77683248
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77676422..77679960-chr15:77680439..77684994,6	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10162742	1.00[YRI][hapmap]
rs10162778	0.80[ASN][1000 genomes]
rs11853696	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11854466	0.83[ASN][1000 genomes]
rs11856084	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11857330	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs11858844	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12324016	0.90[ASN][1000 genomes]
rs12324211	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs12324366	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12324795	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12912084	0.92[ASN][1000 genomes]
rs13380202	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1493699	0.90[ASN][1000 genomes]
rs16968730	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs16968799	0.90[ASN][1000 genomes]
rs17384809	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17385059	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17385296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17385352	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17470529	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17470952	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17471252	0.85[ASN][1000 genomes]
rs17471431	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17471480	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17471697	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17471753	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17472200	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2012740	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2012756	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2137977	0.83[ASN][1000 genomes]
rs2172587	0.90[ASN][1000 genomes]
rs2292594	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2307141	1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28437977	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2864840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34572155	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs35651077	0.90[ASN][1000 genomes]
rs3784787	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784788	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4592615	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs4886857	0.83[ASN][1000 genomes]
rs4886863	0.92[ASN][1000 genomes]
rs4886864	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59362734	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59386622	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60079927	0.83[ASN][1000 genomes]
rs62007297	0.90[ASN][1000 genomes]
rs62010566	0.90[ASN][1000 genomes]
rs7182221	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs74025105	0.83[ASN][1000 genomes]
rs74026910	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74026912	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74026913	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74026918	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74026923	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74026925	0.82[EUR][1000 genomes]
rs8029163	0.80[ASN][1000 genomes]
rs907398	1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1830237	chr15:77535785-77694607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1836778	chr15:77608747-77694607	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv1795063	chr15:77628696-77697976	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv1800929	chr15:77664889-77697976	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1792043	chr15:77664901-77708316	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8035526	TSPAN3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77639800-77687000	Weak transcription	Primary B cells from cord blood	blood
2	chr15:77647000-77687200	Weak transcription	A549	lung
3	chr15:77648600-77685800	Weak transcription	Gastric	stomach
4	chr15:77669400-77683400	Weak transcription	Fetal Stomach	stomach
5	chr15:77673200-77683400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:77674200-77686600	Weak transcription	Ovary	ovary
7	chr15:77674800-77684000	Weak transcription	Stomach Mucosa	stomach
8	chr15:77675000-77684400	Weak transcription	Spleen	Spleen
9	chr15:77675000-77709400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:77675600-77685200	Weak transcription	Lung	lung
11	chr15:77677200-77685800	Weak transcription	NHLF	lung
12	chr15:77678000-77685600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:77678200-77686200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:77678200-77695200	Weak transcription	HUVEC	blood vessel
15	chr15:77679800-77685400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr15:77680400-77683800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:77680400-77685200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:77680400-77686600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr15:77680600-77685200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:77680600-77685800	Weak transcription	Osteobl	bone
21	chr15:77680600-77687400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:77680600-77687600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr15:77682000-77683600	Enhancers	Rectal Smooth Muscle	rectum
24	chr15:77682000-77683800	Enhancers	Adipose Nuclei	Adipose
25	chr15:77682000-77684400	Enhancers	Brain Substantia Nigra	brain
26	chr15:77682200-77684200	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr15:77682200-77684400	Enhancers	Colon Smooth Muscle	Colon
28	chr15:77682200-77685400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr15:77682400-77683600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:77682400-77684400	Enhancers	NHDF-Ad	bronchial
31	chr15:77682600-77684000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr15:77682600-77684400	Enhancers	Brain Anterior Caudate	brain
33	chr15:77682800-77683400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:77682800-77683400	Enhancers	Primary B cells from peripheral blood	blood
35	chr15:77682800-77683600	Enhancers	Left Ventricle	heart
36	chr15:77682800-77683600	Enhancers	Psoas Muscle	Psoas
37	chr15:77682800-77683600	Enhancers	Stomach Smooth Muscle	stomach
38	chr15:77683000-77683600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:77683000-77683800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:77683000-77687400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr15:77683000-77690600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:77683200-77683400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:77683200-77683400	Enhancers	Fetal Intestine Large	intestine
44	chr15:77683200-77683600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:77683200-77683600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:77683200-77683600	Enhancers	Fetal Muscle Leg	muscle
47	chr15:77683200-77683600	Enhancers	Placenta	Placenta
48	chr15:77683200-77683600	Enhancers	Right Atrium	heart
49	chr15:77683200-77683600	Enhancers	Right Ventricle	heart
50	chr15:77683200-77683800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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