Variant report

Variant	rs74026926
Chromosome Location	chr15:77802961-77802962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77797715..77799505-chr15:77800913..77803118,3	MCF-7	breast:
2	chr15:77800783..77803044-chr15:77808974..77810922,2	K562	blood:
3	chr15:77800020..77805731-chr15:77808908..77813033,5	MCF-7	breast:
4	chr15:77787813..77789650-chr15:77801931..77804877,2	K562	blood:
5	chr15:77802309..77804829-chr15:77815789..77819880,3	MCF-7	breast:
6	chr15:77798766..77801292-chr15:77802279..77806455,3	K562	blood:

Variant related genes	Relation type
ENSG00000259362	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11856084	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11858844	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12324016	0.80[ASN][1000 genomes]
rs12324211	0.89[ASN][1000 genomes]
rs12324795	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12912084	0.82[ASN][1000 genomes]
rs1493699	0.80[ASN][1000 genomes]
rs16968799	0.80[ASN][1000 genomes]
rs16968897	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16968900	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17470952	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17471252	0.83[ASN][1000 genomes]
rs17471431	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17471480	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17471697	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17471753	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17472200	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2012740	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2012756	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2172587	0.80[ASN][1000 genomes]
rs2307141	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2864840	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35651077	0.80[ASN][1000 genomes]
rs3784788	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4886863	0.82[ASN][1000 genomes]
rs56097641	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59204923	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59362734	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59386622	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61306472	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62007297	0.84[ASN][1000 genomes]
rs62010566	0.80[ASN][1000 genomes]
rs74026910	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74026912	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74026913	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74026918	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74026923	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74026925	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs907398	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv570139	chr15:77762493-77865459	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv570140	chr15:77787469-77851535	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77786400-77803800	Weak transcription	Primary T cells from cord blood	blood
2	chr15:77795400-77803000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:77796600-77803800	Enhancers	Left Ventricle	heart
4	chr15:77796600-77804200	Enhancers	Fetal Heart	heart
5	chr15:77797000-77803200	Enhancers	Lung	lung
6	chr15:77797000-77803400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:77797000-77803800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:77797200-77803200	Enhancers	Right Atrium	heart
9	chr15:77798000-77803200	Enhancers	Spleen	Spleen
10	chr15:77798400-77803400	Enhancers	Fetal Muscle Trunk	muscle
11	chr15:77798400-77803800	Enhancers	Fetal Muscle Leg	muscle
12	chr15:77799000-77803800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:77799000-77803800	Enhancers	Psoas Muscle	Psoas
14	chr15:77800200-77803400	Enhancers	Right Ventricle	heart
15	chr15:77800200-77804200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:77800200-77805800	Weak transcription	Fetal Brain Male	brain
17	chr15:77800400-77803800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr15:77800400-77804200	Enhancers	H9 Cell Line	embryonic stem cell
19	chr15:77800400-77819600	Weak transcription	Fetal Brain Female	brain
20	chr15:77800600-77804000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr15:77800600-77807000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:77800800-77803000	Enhancers	Brain Hippocampus Middle	brain
23	chr15:77800800-77803400	Enhancers	Adipose Nuclei	Adipose
24	chr15:77800800-77804200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr15:77800800-77804200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr15:77801000-77818800	Weak transcription	Fetal Intestine Small	intestine
27	chr15:77801400-77803000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:77801400-77803600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr15:77801400-77820000	Weak transcription	Colon Smooth Muscle	Colon
30	chr15:77801600-77803600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:77801600-77804000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr15:77801600-77821400	Weak transcription	Pancreas	Pancrea
33	chr15:77801800-77803200	Weak transcription	Fetal Lung	lung
34	chr15:77801800-77803200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr15:77801800-77805400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:77801800-77806000	Weak transcription	HUVEC	blood vessel
37	chr15:77801800-77807000	Weak transcription	Brain Anterior Caudate	brain
38	chr15:77801800-77807200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr15:77801800-77807400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:77802400-77803000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr15:77802400-77803000	Enhancers	Brain Cingulate Gyrus	brain
42	chr15:77802400-77803200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr15:77802400-77803200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:77802400-77803200	Enhancers	Fetal Stomach	stomach
45	chr15:77802400-77803400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr15:77802400-77803400	Enhancers	Placenta	Placenta
47	chr15:77802600-77803000	Flanking Active TSS	HepG2	liver
48	chr15:77802600-77803200	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr15:77802600-77803400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:77802600-77820000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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