Variant report

Variant	rs74026928
Chromosome Location	chr15:77822125-77822126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77811694..77814314-chr15:77820121..77822806,2	K562	blood:
2	chr15:77822048..77824496-chr15:77832446..77834927,2	K562	blood:
3	chr15:77819974..77827062-chr15:77831334..77836599,8	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55923211	1.00[AFR][1000 genomes]
rs56073412	1.00[AFR][1000 genomes]
rs74025108	1.00[AFR][1000 genomes]
rs74025110	1.00[AFR][1000 genomes]
rs74025111	1.00[AFR][1000 genomes]
rs74025195	1.00[AFR][1000 genomes]
rs74025202	1.00[AFR][1000 genomes]
rs74026915	1.00[AFR][1000 genomes]
rs74026924	1.00[AFR][1000 genomes]
rs74026934	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv570139	chr15:77762493-77865459	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv570140	chr15:77787469-77851535	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77816400-77823400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:77817200-77824000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:77817600-77822600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:77817600-77822600	Enhancers	Fetal Stomach	stomach
5	chr15:77817600-77824800	Enhancers	Placenta	Placenta
6	chr15:77817800-77823400	Enhancers	Fetal Muscle Trunk	muscle
7	chr15:77817800-77824200	Enhancers	Fetal Muscle Leg	muscle
8	chr15:77818600-77822200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:77818600-77823400	Enhancers	Fetal Intestine Large	intestine
10	chr15:77818800-77822400	Enhancers	Fetal Lung	lung
11	chr15:77818800-77822800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr15:77819000-77822200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr15:77819200-77822400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr15:77819200-77822400	Enhancers	Ovary	ovary
15	chr15:77819400-77822200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr15:77819400-77822600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:77819400-77822800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:77819600-77822400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr15:77819600-77828600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:77819800-77822400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr15:77819800-77831000	Weak transcription	Gastric	stomach
22	chr15:77820200-77823600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:77820400-77822400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:77820600-77822400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr15:77820600-77823000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr15:77820600-77823200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr15:77820800-77826200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr15:77821000-77825600	Weak transcription	Fetal Brain Female	brain
29	chr15:77821000-77825800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:77821000-77825800	Enhancers	Spleen	Spleen
31	chr15:77821000-77826800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:77821000-77831200	Weak transcription	Esophagus	oesophagus
33	chr15:77821200-77822800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:77821400-77823200	Genic enhancers	Fetal Intestine Small	intestine
35	chr15:77821400-77825200	Weak transcription	Brain Germinal Matrix	brain
36	chr15:77821400-77826000	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:77821600-77823600	Enhancers	Placenta Amnion	Placenta Amnion
38	chr15:77821600-77825200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:77821600-77825400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:77821600-77825400	Weak transcription	Fetal Brain Male	brain
41	chr15:77821600-77826000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:77821600-77830200	Weak transcription	Left Ventricle	heart
43	chr15:77821800-77825000	Weak transcription	Fetal Kidney	kidney
44	chr15:77821800-77827600	Weak transcription	Pancreas	Pancrea
45	chr15:77822000-77822200	Enhancers	HepG2	liver
46	chr15:77822000-77824200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr15:77822000-77825200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:77822000-77825400	Weak transcription	Right Ventricle	heart
49	chr15:77822000-77825600	Weak transcription	Fetal Heart	heart
50	chr15:77822000-77833600	Weak transcription	Right Atrium	heart

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